Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1124 ATGTCGCGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTCCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACAGGAGCTCTCAACACTGTGTGATGCTGAGATAGCGCATATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGGAAAATGAGAGGAGAAGAGCTCCAGGGATTAAAAATTGAAGAATTGCTTGAAGCTGGTCCGTGCAGCATTGTGGAAGAAAAGGTCTGTTTTATCAAATTATGA 285 0.4351 MSRQKIQIKKIDNTAARQVTSSKRRRGLFKKAQELSTLCDAEIAHIVFSAAGKLFEYSSSRKMRGEELQGLKIEELLEAGPCSIVEEKVCFIKL* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1124 94 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Vvi3g1124 94 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi3g1124 94 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi3g1124 94 FunFam Uncharacterized protein 13 69 - -
Vvi3g1124 94 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi3g1124 94 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi3g1124 94 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi3g1124 94 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Vvi3g1124 94 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 77 - -
Vvi3g1124 94 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1124 Vvi-Chr3 14881928 14892855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1124 1 88 MADS-box Gene Family AT2G22540 44.366 5.77e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g1124 SRF-TF 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1124 - - vvi:100853161 127.102