Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1104 ATGGTATTGTCGCTGTTAGTGCAGCCGGGAATGAAGGACCCGAGCATGTGGTTTCTTGACCACAACTATCATGAACCAATGTTTTCCACGTTCAAGGGAATCAATGCCAAGGAGCATGTGGTTGGATGGTACAGCACAGGACCAACACTGCAGGAGAACGACCTAGATATTCCCGGACTGTTCCATGACTATGCTCCTAATCCTGTCTTAGTCATAATTGATGTCCAACCAAAGGAGATAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGAGTGCAACCCAGAAAAGCCAGAATGGTTCAAGCAGCTGA 324 0.466 MVLSLLVQPGMKDPSMWFLDHNYHEPMFSTFKGINAKEHVVGWYSTGPTLQENDLDIPGLFHDYAPNPVLVIIDVQPKEIGIPTKAYYAVEEVKESATQKSQNGSSS* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1104 107 Gene3D Cytidine Deaminase, domain 2 2 105 - -
Vvi3g1104 107 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 5 66 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi3g1104 107 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1104 Vvi-Chr3 14324591 14324914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1104 19 74 Eukaryotic Initiation Factors Gene Family AT2G39990 33.929 1.62e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1104 K03038 - vvi:100247677 174.866