Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1103 ATGGCTTCAGAGAAGAAACTCTCAAACCCAATGAGGGACATCAAGGCCCAGAAGCTCGTCCTCAACATCTCCATTGGAGAAAGTGGAGATCGCCTCACCAGAGCCGCTAAGATTGCTTGCTACGTCACTGTCAGGGGCGAGAAAGCAATGCAGCTTCTTGAGAGTGGTTTGAAGGTCAAGGAATATGAGTTGCTGTTGAGGTCACTGGAGGGCTTTAAATTCCTTTCCACCCAGGGAGAGAGGACAAGCCGGAGCCACCACCTGAGGGTCGTCTACCAGATGCCACCAAAAGATGCGATCACTTGA 306 0.5131 MASEKKLSNPMRDIKAQKLVLNISIGESGDRLTRAAKIACYVTVRGEKAMQLLESGLKVKEYELLLRSLEGFKFLSTQGERTSRSHHLRVVYQMPPKDAIT* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1103 101 Gene3D - 3 36 IPR022803 -
Vvi3g1103 101 Gene3D - 37 86 IPR022803 -
Vvi3g1103 101 FunFam Uncharacterized protein 3 39 - -
Vvi3g1103 101 SUPERFAMILY RL5-like 8 65 IPR022803 -
Vvi3g1103 101 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 37 65 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1103 Vvi-Chr3 14311227 14311619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1103 1 69 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 64.286 5.58e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1103 K02868 - vvi:100246959 191.045