Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1101 ATGGTGAAGTGCTCTGGAGAATCAGACAATCCCACCAAGTTTTGCAATATCGGGGACTCAGATTCCAGAGTTCACTTCAAGAATACCAGGGTGACTACTCGGGCAACCAGTATGTTGCTTTTGACCATGGTCAGAGGGTATTTGGAGGACGCCCTAGTCCGCGAGCAAACCATGCCTTTCACCCGTTTTTGTAGAGAATCTGTTGGACCATCCAAAATTGAAAAAGAAAAGGGAGAATTATCACCTAATGGTGATTTTGAGGAGGATAATCTTGTTGTCTATGGAGATGCTAGTACCCAGGTTGTGCCTTTGGCAAAGCACAATCCTGAAAGGCGGCCATTCCGAGCGGGTGATGGACAAGAGAGGGATTGTCAGGTTGCTGGAGGAGAAAGTGGTGCAGATGCTGATGATGAGGATGGTGAAAACGCTTCTGAGGCTGGTGAAGATGTCTCAGCTAGTGAGTCTGCAGGTGATGAGTGCTCTCGAGGAGAGTAG 495 0.4808 MVKCSGESDNPTKFCNIGDSDSRVHFKNTRVTTRATSMLLLTMVRGYLEDALVREQTMPFTRFCRESVGPSKIEKEKGELSPNGDFEEDNLVVYGDASTQVVPLAKHNPERRPFRAGDGQERDCQVAGGESGADADDEDGENASEAGEDVSASESAGDECSRGE* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1101 164 Gene3D Ribosomal protein L22/L17 1 84 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vvi3g1101 164 PANTHER 60S RIBOSOMAL PROTEIN L17 1 66 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vvi3g1101 164 MobiDBLite consensus disorder prediction 102 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1101 Vvi-Chr3 14289874 14290525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1101 1 65 Cytoplasmic Ribosomal Protein Gene Family AT1G67430 55.385 1.04e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1101 K11644 - vvi:100254234 159.073