Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1086 ATGGCGCACTCAGGGTTCTGGTTTGGAAGGGATGTGGAGATCCTGTTCAGTGGATGGCCTGTAAATTACGGCCACTTCCATTTGTTCTTGGCTCTGCTTCTTGTGTTCATGCTATCTGCGTTAGCCCAGATGTATTCAATGACTCCCATGACCACGCCCAAGATGGTTCCTAAGAGCATCATCCAACACGCCGCTCTCCATGGCTTCCGCACTTTGATCACCTACTTGGTCCTCCTCTGTGTCATTACCTTCAATGTTGGAGTCATAATTACGGTACTCCTTGGACACGTCGCCGGCTACTTAGCTCTCACATTGTACATCAAGTACTACTACCCTGCTCCCGTTGCTTCTACTCCTGTAGATGATGTCAAAGCCTGA 378 0.4921 MAHSGFWFGRDVEILFSGWPVNYGHFHLFLALLLVFMLSALAQMYSMTPMTTPKMVPKSIIQHAALHGFRTLITYLVLLCVITFNVGVIITVLLGHVAGYLALTLYIKYYYPAPVASTPVDDVKA* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1086 125 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 105 IPR007274 GO:0005375|GO:0016020|GO:0035434
Vvi3g1086 125 Pfam Ctr copper transporter family 50 102 IPR007274 GO:0005375|GO:0016020|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1086 Vvi-Chr3 13475748 13476125 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1086 6 124 Inorganic Solute Cotransporters AT3G46900 27.273 2.63e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1086 K14686 - vvi:100852816 240.35