Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1076 ATGGCTTCCTCTGGCGGTCCCATGCCAGTGCTGCCCACCGAGAAGGCAGTGGCACACACAAGCTTCTGGGTCGGGACCAATGTGATGGTCCTGTTCCCTGGATGGCCTGGTAATTACATCCTCTTGCATTACTACTTGGCTCTACTTCTGGTCTTTGTGCTTGCCCTCCTTACTCCGATTTGTGGAATGTGTTCCATGCCTGCCAACAAACAGATGGCCCCTATGACCCTGCTTCTCTACGCCATGAGGCATGGCCTGCGCAAGTGCCTTTTCTACTTGGTGGTGCTCTCGGTCGTCACCTTCAATGTTGGAGTTTTCCTTGCAGCTATCGCTGGACATGTGATAGGCTACTTTGCCCTCTCTGCATGTATGCTCTATCATCATCGCACTACAACTGATACCAAAGTCTGA 411 0.5207 MASSGGPMPVLPTEKAVAHTSFWVGTNVMVLFPGWPGNYILLHYYLALLLVFVLALLTPICGMCSMPANKQMAPMTLLLYAMRHGLRKCLFYLVVLSVVTFNVGVFLAAIAGHVIGYFALSACMLYHHRTTTDTKV* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1076 136 Pfam Ctr copper transporter family 70 119 IPR007274 GO:0005375|GO:0016020|GO:0035434
Vvi3g1076 136 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 15 129 IPR007274 GO:0005375|GO:0016020|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1076 Vvi-Chr3 13163581 13163991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1076 20 135 Inorganic Solute Cotransporters AT5G59030 38.211 3.69e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1076 K14686 - vvi:104878906 255.758