LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g1046	ATGGCTGTTTCCAACACAGGGATTACACAACTGCCAACACAAAAACTTCTTTTCTTTCATCTTTTCATGATTTCCGTTTCCTTCTTCCTAATATTCCCTTGTGCAACCTCGTTATCCTTCAACTTCACCGGCTTTGATCGGAACAAAGGTCAAATATACTTCGAGAAAGATGCTTTTGTTTCTCCGGATCAAGTCATCCAACTAACCAGAAACCTTCAGAATGCTGCAATGAATTATAGTTGGGGTCGGGCCACGTATATGAAGCAATTGCACCTCTGGGATAAGGTCTCCGGAAATCTCACTGATTTCACTACCAGTTTCACCTTTGTCATTGATTCGCAGAAGAACAATCGGTATGGTGATGGGCTCGCGTTCTTCCTTGCTCCCAATCGCGCACAGTTGCCTTCAAAAATGACAGGAGGTAGCGGCCTTGGTATTGTAAGTCCCAGCCAGGCGTTGAACACTAGAAAAAACCGTTTTGTTGCAGTGGAATTCGATACTTATCGAAACGATTGGGACCCAAGGTACCCAATAAAGGATCATGTTGGTATCAATATCAACTCCATGAAATCTGTCAAAAATGCCGCATGGTTGAGTAATATTCCGGAAGGTCAAACAAATCATGCTTCCATCAAGTATACCTCTGGTACCAAGAATCTGAGTGTTGTTTTAAGGACTGGTAGGGGTAATACAAGTTCCATACAAAGTCTTTATTACATAGTTGATTTACGGAAATACTTGCCAGAATTCGCAACTGTTGGCATCTCAGCTGCAACGGGAAGGTATTTTGAGATACACGGCATTCATTCGTGGAGTTTTAATTCAACTCTAGAAACTCTTCCGCATCCTCCAGAAACAGGAGCTGAAATTCCCAATCCCCCGGAAACAGTAGCTGAACCCCCCAATCTTCCAAAAATTGGAGATGAAAATAATAAAGGACTAGTGGTGGGATTGGGTGTTTGTGCATTTGTTGTGGTGGTTGGGTTGGGTGGGACTGTGTTTTACTTGTGCAGGAAGAAGAACGAAGGGGGAATTGAAGATGATAATGATTTTGACCTGGCAATGGACCACGAATTTGAGAAGGGCACTGGACCTAGGAAGTTTTCATTTGATGAATTAGCTCTTGCCACAAGTAACTTTTCAGAGGGAGAGAAGCTTGGAGAGGGAGGGTTTGGTAGGGTTTATAGAGGTTTCTTAAGAGAACGGAGCTCCTATATTGCTGTTAAGAGGATATCAAGGAGGTCTAAACAAGGGATGAAGGAGTACGCATCTGAAGTAAAGATCATCAGTAGATTAAGGCATCGAAACTTGGTGCAGCTCATGGGCTGGTGCCATAAAAAGGGAGAGCTCCTAATGGTTTACGAATTCATGCCTAACAACAGTTTGGATTCTTGTTTGTTTGAAGCAAAAACCTTGTTGAGATGGGCCATGAGGTACAAAATTGCTGTTGGATTGGCTTTGGCAGTGCTCTACCTTCATGAAGAATGGGAACAATGTGTGGTACATAGGGATATCAAATCGAGTAATGTGATGTTGGATTCAGATTTCAATGCTAAGCTCGGAGATTTTGGACTGGCTAGGTTTGTTGATCATGGGAAAGGGTCACAAACCACAGTTTTAGCTGGGACCATGGGGTACATGGCTCCTGAATGTTTCATGACCAGCAAGGCCAGCAAGGAATCCGATGTCTACAGTTTTGGGGTTGTTGTGTTAGAAATTTGCTGTGGCAGAAGATCGGTGGAACCCAAGGCTAAAGAAAATCAGATCAGATTGGTGGAGTGGGTTTGGGACCTCTATGGAGTAGGAAAGCTTCTTGAAGCAGCTGATCCAAGACTATCTGCAGATTTTGATGAGCAACAAATGAAACGATTGATGACTGTAGGGCTTTGGTGTGCTCATCCAGATTGCAATCTTCGCCCTTCGATAAGGCAAGCGATTAATGTCCTTAACTTCGAAGCATCGCTGCCCATTCTCCCTTCAAAGATGCCAGTGCCAATGTATTTTTCTCCTCCAGTAAATACGCCTGCATTTTGGCCTACAACTTCCTATAATGCTACTAGCACTTCTGGAATAGGCCAAACCAAGTTTTAG	2091	0.4338	MAVSNTGITQLPTQKLLFFHLFMISVSFFLIFPCATSLSFNFTGFDRNKGQIYFEKDAFVSPDQVIQLTRNLQNAAMNYSWGRATYMKQLHLWDKVSGNLTDFTTSFTFVIDSQKNNRYGDGLAFFLAPNRAQLPSKMTGGSGLGIVSPSQALNTRKNRFVAVEFDTYRNDWDPRYPIKDHVGININSMKSVKNAAWLSNIPEGQTNHASIKYTSGTKNLSVVLRTGRGNTSSIQSLYYIVDLRKYLPEFATVGISAATGRYFEIHGIHSWSFNSTLETLPHPPETGAEIPNPPETVAEPPNLPKIGDENNKGLVVGLGVCAFVVVVGLGGTVFYLCRKKNEGGIEDDNDFDLAMDHEFEKGTGPRKFSFDELALATSNFSEGEKLGEGGFGRVYRGFLRERSSYIAVKRISRRSKQGMKEYASEVKIISRLRHRNLVQLMGWCHKKGELLMVYEFMPNNSLDSCLFEAKTLLRWAMRYKIAVGLALAVLYLHEEWEQCVVHRDIKSSNVMLDSDFNAKLGDFGLARFVDHGKGSQTTVLAGTMGYMAPECFMTSKASKESDVYSFGVVVLEICCGRRSVEPKAKENQIRLVEWVWDLYGVGKLLEAADPRLSADFDEQQMKRLMTVGLWCAHPDCNLRPSIRQAINVLNFEASLPILPSKMPVPMYFSPPVNTPAFWPTTSYNATSTSGIGQTKF*	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g1046	696	FunFam	Lectin-domain containing receptor kinase A4.3	457	669	-	-
	Vvi3g1046	696	FunFam	L-type lectin-domain containing receptor kinase IX.1	36	284	-	-
	Vvi3g1046	696	FunFam	L-type lectin-domain containing receptor kinase IX.1	365	456	-	-
	Vvi3g1046	696	ProSitePatterns	Legume lectins beta-chain signature.	161	167	IPR019825	-
	Vvi3g1046	696	PANTHER	-	68	656	-	-
	Vvi3g1046	696	SUPERFAMILY	Protein kinase-like (PK-like)	364	678	IPR011009	-
	Vvi3g1046	696	Gene3D	Phosphorylase Kinase; domain 1	365	456	-	-
	Vvi3g1046	696	Pfam	Protein kinase domain	381	647	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g1046	696	ProSitePatterns	Protein kinases ATP-binding region signature.	386	409	IPR017441	GO:0005524
	Vvi3g1046	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	500	512	IPR008271	GO:0004672\|GO:0006468
	Vvi3g1046	696	Gene3D	Transferase(Phosphotransferase) domain 1	457	670	-	-
	Vvi3g1046	696	SMART	serkin_6	380	654	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g1046	696	CDD	lectin_legume_LecRK_Arcelin_ConA	38	277	IPR001220	GO:0030246
	Vvi3g1046	696	CDD	STKc_IRAK	386	650	-	-
	Vvi3g1046	696	Gene3D	-	35	282	-	-
	Vvi3g1046	696	Pfam	Legume lectin domain	37	281	IPR001220	GO:0030246
	Vvi3g1046	696	SUPERFAMILY	Concanavalin A-like lectins/glucanases	36	277	IPR013320	-
	Vvi3g1046	696	ProSiteProfiles	Protein kinase domain profile.	380	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g1046	Vvi-Chr3	12333546	12335636	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g1046	27	667	Receptor kinase-like Gene Family	AT5G10530	46.462	0.0	539

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi3g1046		Pkinase	7.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g1046	-		-	vvi:100852575	1399.03