Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1045 ATGTCATATCTTTGGCTTTCTTTTTCTCTCTTTAGGGGTTTGGTCGAAAATTTTCCAATGCCGCGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACTGGAGCTCTCGACACTGTGTGATGCCGAGATAGAGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGGTTAGTTTTCTCATCTCTCCTATTCCTTCTTTTTATACATAGATATATGAATCTCAGTGCATTTTGCAGGCAATCCTAG 318 0.4151 MSYLWLSFSLFRGLVENFPMPRQKIQIKKIDNTAARQVTFSKRRRGLFKKALELSTLCDAEIELIVFSAAGKLFEYSSSRLVFSSLLFLLFIHRYMNLSAFCRQS* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1045 105 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Vvi3g1045 105 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Vvi3g1045 105 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Vvi3g1045 105 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Vvi3g1045 105 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Vvi3g1045 105 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Vvi3g1045 105 CDD MADS_MEF2_like 22 100 IPR033896 GO:0000977|GO:0045944
Vvi3g1045 105 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Vvi3g1045 105 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 95 - -
Vvi3g1045 105 Gene3D - 32 99 IPR036879 GO:0003677|GO:0046983
Vvi3g1045 105 SUPERFAMILY SRF-like 20 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1045 Vvi-Chr3 12294167 12294776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1045 20 81 MADS-box Gene Family AT4G24540 75.806 2.70e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g1045 SRF-TF 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1045 - - vvi:100265532 117.857