Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1044 ATGGCTGATGTTCATAGAGGAAGCAATTACATGACTAGAACAAGAGTGAATGGTTTTTGGCTCATAGAGGATGTTGAAATTAAGGAGGTGATTGAAAGGCACAGTCAGCATCCACAGACTCCAGAGAAACCAGAGCCACCATCTCTGGAGCTGCAGCTGGAGAACAGAACCTGTGCAGCCTTGAGCAAAGAAATTGCTCAGCAGACTCAGAGGCTGAGGCAAATGAGAGGAGAAGAGCTCCAGGGATTAAAAATAGAAGAATTGATTGAACTAGAGAAATTACTTGAAGCTGGTCTGTGCAGCGTTGTGGAAGAAAAGGCTGAAAGAATTCAAACAGAGATCAGTGACCTCCAGAGAAAGGGAGACCTGCTGCGGGGAGAGAATGAAAGGTTGAGAAAGTGGATGGAGAATATTTCTGAAGCACAACCTCTTCTTCAACAGGGCCACTCATCTGAATCAATCACAAATAATATTTGCAGCTTATCAGATCCTAATCAAGGCCATCACAACTCTGATACTTCTCTCAAGCTGGGGTTACCATTCTCCAACTGA 552 0.442 MADVHRGSNYMTRTRVNGFWLIEDVEIKEVIERHSQHPQTPEKPEPPSLELQLENRTCAALSKEIAQQTQRLRQMRGEELQGLKIEELIELEKLLEAGLCSVVEEKAERIQTEISDLQRKGDLLRGENERLRKWMENISEAQPLLQQGHSSESITNNICSLSDPNQGHHNSDTSLKLGLPFSN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1044 183 Pfam K-box region 55 135 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi3g1044 183 Coils Coil 51 78 - -
Vvi3g1044 183 Coils Coil 100 127 - -
Vvi3g1044 183 ProSiteProfiles K-box domain profile. 51 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi3g1044 183 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1044 Vvi-Chr3 12256979 12270440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1044 27 181 MADS-box Gene Family AT2G22540 47.753 3.60e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1044 - - vvi:100252160 285.034