Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1042 ATGCTTAATGTCTCAATCCCCCCCAACCATGGCTACCTTGAAGAGTGGAAGTATTGCCTCCGATCGCCACAGTTCCCTTTCCCTTCTCTCTTCACCATGATCTCTATTTTCTTCATTCTATTAATGATCCCTTCTGCAACTTCATTAGACTTCAACTTCACCAGTTTCAGTCCCTATAATGATAACATAACCTATGAGGGATCTGCTTTTCCCAGAAACCAAATCATCCAACTAACACAAGCTCAATCAGCGAGCATCGGTTGGGCCACATATGTTCAACCCTTGCACCTATGGGACAAGGCCTCAGGAAATCTCACTGACTTCACCACCCATTTCTCCTTCGTCATAGACACACAGAACCGCTCTGGTAGTCATGGTGATGGGATTGCCTTCTTCCTTATGCCTGCTGATTCACAGAAGCCTAATGTCACAAAGGGTGGGGGTCTTGGTCTTGCAAGTGACACCCAGCCACTGAACACAACCGTGAATCATTTTGTTGCGGTGGAATTTGATATTTATAAGAACCGTTGGGATCCAAACGACACCCACGCAGGTATTGACATCAACTCTGTTCAATCAATCCGTAATGTGAAATGGTGGGATAGTATTATAAATGGGAGGAGAAATGATGCATGGATCAGTTATAACTCTAGTTCTAAAAATCTAAGTGTCGTCTTCACTGGTTTTAGGAATGATAGTACTATTCTGCAGGATAACCTTTATTATGAAGTTGATCTGAGGCTTTACCTCCCAGAATGGGTTAGTTTTGGCTTCTCAGGTGCAACAGGAAATGCATCAGCCATACATGCCATTTATTCATGGAGTTTCAGCTCAAGTTTACAGACTGATGAAAATAAAACAAATCCAACATCGCCAGAAGCAGAAACGCCAACTTCCAATCCCAACTCTAATCCTTCAAGAAAAATCAAGGTTAAACTAGTGGTGGGATTGACTGTCGGTGGATGTGCTTTCGTTGGTGGTTTGAGTTTGGTTTTGTTTTTGTTCTTGAAAAGTAGAAGGGGAAAAGTTGATAATCCAGTCATTGATCAGCTGTCCATGGAGGATGACTTTGAAAAAGGTACTGGACCCAAGAAGTTTCGGTACAATGAATTGGCTAGTTCAACCAATAACTTTGCAGAGGAAGGGAAGCTTGGGGAAGGAGGGTTTGGAGGGGTTTACAAAGGTTTCTTGAAGGAATTGGACTCTTATATTGCTGTTAAGAGGGTATCAAGTGGGTCTAAACAAGGGATAAAGGAGTATGTATCAGAAGTAAAGATCATTAGTCGATTGAGACATAGGAACTTGGTCCAACTGATTGGTTGGTGTCATGAGAAAAGAGACCTACTACTTGTTTATGAGTTCATGCCCAATGGCAGCTTAGAGTCTCATATTTTTAGTGAAAGAAGCTTGCTGACTTGGGAGATGAGGTACAAAATCGCTCAAGGGTTGGCATCAGCATTGCTTTATCTTCATGAAGGATGGGAGCAATGTGTACTGCACAGGGATATAAAATCTAGCAACATCATGCTGGATTCAGGTTTTAACGCTAAACTTGGGGATTTTGGACTAGCTAGGCTTGTTGACCACGGAAAGGGATCACAAACCACAGTTTTAGCTGGAACCATGGGCTACATGGCTCCAGAATGTGCCACAACAGGCAAGGCCAGCAAGCAGTCTGATATCTACAGCTTTGGGGTGGTTGCTTTAGAAATAGCTTGTGGAAGAAAACCCATTAACCTAAAGGCCAAAGAAGATCAAATAATGATGCTGGAATGGGTCTGGGATCTCTATGGGAAAGGAAATATTTTAGAGGCAGCCGATCCTAGGCTATGTGCAGAATTTGATGCGCAACAGATGCAATGTTTGATGACTGTTGGGCTTTGGTGTGCTCACCCAGATAGAAATCTCCGGCCTTCAGTAAGGGAAGTAATCCATGTCCTTAATTTTGAAGCGCCATTGCCCATTCTCCCTCCAAAGATGCCCGTCCCAACGTACTCTATCCCTGGAGCGATGTCTACAGTCTTGCTTCCAGCCTCATCCAGTACCACCGCTTCTGAGAGAAGTCAAACCCAGCTTTCCATCTATTGTACAGATTCATCAAAGATAACAACATCTTCTGCAGCTTCTTCTCCATCTGCGACACTTATTTCTATAACACGTTAA 2163 0.4323 MLNVSIPPNHGYLEEWKYCLRSPQFPFPSLFTMISIFFILLMIPSATSLDFNFTSFSPYNDNITYEGSAFPRNQIIQLTQAQSASIGWATYVQPLHLWDKASGNLTDFTTHFSFVIDTQNRSGSHGDGIAFFLMPADSQKPNVTKGGGLGLASDTQPLNTTVNHFVAVEFDIYKNRWDPNDTHAGIDINSVQSIRNVKWWDSIINGRRNDAWISYNSSSKNLSVVFTGFRNDSTILQDNLYYEVDLRLYLPEWVSFGFSGATGNASAIHAIYSWSFSSSLQTDENKTNPTSPEAETPTSNPNSNPSRKIKVKLVVGLTVGGCAFVGGLSLVLFLFLKSRRGKVDNPVIDQLSMEDDFEKGTGPKKFRYNELASSTNNFAEEGKLGEGGFGGVYKGFLKELDSYIAVKRVSSGSKQGIKEYVSEVKIISRLRHRNLVQLIGWCHEKRDLLLVYEFMPNGSLESHIFSERSLLTWEMRYKIAQGLASALLYLHEGWEQCVLHRDIKSSNIMLDSGFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECATTGKASKQSDIYSFGVVALEIACGRKPINLKAKEDQIMMLEWVWDLYGKGNILEAADPRLCAEFDAQQMQCLMTVGLWCAHPDRNLRPSVREVIHVLNFEAPLPILPPKMPVPTYSIPGAMSTVLLPASSSTTASERSQTQLSIYCTDSSKITTSSAASSPSATLISITR* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1042 720 CDD STKc_IRAK 392 648 - -
Vvi3g1042 720 ProSitePatterns Protein kinases ATP-binding region signature. 384 407 IPR017441 GO:0005524
Vvi3g1042 720 Gene3D Transferase(Phosphotransferase) domain 1 455 667 - -
Vvi3g1042 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Vvi3g1042 720 FunFam L-type lectin-domain containing receptor kinase IX.1 47 289 - -
Vvi3g1042 720 ProSiteProfiles Protein kinase domain profile. 378 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1042 720 MobiDBLite consensus disorder prediction 282 305 - -
Vvi3g1042 720 Gene3D Phosphorylase Kinase; domain 1 363 454 - -
Vvi3g1042 720 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 285 IPR013320 -
Vvi3g1042 720 CDD lectin_legume_LecRK_Arcelin_ConA 49 280 IPR001220 GO:0030246
Vvi3g1042 720 FunFam Lectin-domain containing receptor kinase A4.3 455 667 - -
Vvi3g1042 720 PANTHER - 66 657 - -
Vvi3g1042 720 FunFam L-type lectin-domain containing receptor kinase IX.1 363 454 - -
Vvi3g1042 720 Gene3D - 47 291 - -
Vvi3g1042 720 Pfam Protein kinase domain 379 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1042 720 SMART serkin_6 378 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1042 720 ProSitePatterns Legume lectins alpha-chain signature. 250 259 IPR000985 -
Vvi3g1042 720 Pfam Legume lectin domain 48 290 IPR001220 GO:0030246
Vvi3g1042 720 SUPERFAMILY Protein kinase-like (PK-like) 362 670 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1042 Vvi-Chr3 12210534 12212696 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1042 34 665 Receptor kinase-like Gene Family AT5G10530 47.582 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g1042 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1042 - - vvi:100259008 1330.08