Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1040 ATGGCTGTCTGCAACGCTGGTATTGCCCTACTCCATTCAAATACACTTCCTTTACTCCATATCTTCATGGTCTCCTTTTTCTTGTCTCTAATGATCCCTTCAGCGAATTCATCATTATCTTTCAGTTTTAATGATTTTGATCCGAATTGTAATCAAATTCATTTTGAGGGGCAGGCTTCTTATTCTGGTGACAAAGCCATCTACCTCACCAGAAGCCAGCAGGAGAAAAAGATGAATGATAGTTGGGGTCGAGCTACATATCGTGAGCCGTTTCACCTTTGGGACAAGGCCTCGAAAAGGATGGCTGATTTCTCTACCAATTTCTCATTTGGAATTGATTCCCAAGGAAAATTTTCTTATGGTGAGGGACTCGCATTCTTTCTTGCTCCATACGGTACCCAATTGCCTTCAGATGTGAGAGGAGGCAGCGGCCTGGGTCTTGTGTCTAACAACCAGCAGGCGCTGAACTCAGAAGCAAATCACTTTTTTGCAGTGGAGTTTGATACTTATCCAAATGATTGGGATCCAAAATATGATCATGTTGAGCTTCTATTGGTATACGACTTCATGCCAAACGGTTGTTTGGCCTCTCATTTGTTTGAAGGAAAAACCTTGTTGACATGGGCAATGAGGTACAAAATTGCTACCGGATTGGCCTCAGCGTTGCTCTACCTACATGAAGAATGGGAACAATGTGTTGTGCACAGAGATGTAAAATCGAGTAACGTGATTCTGGATGCAGATTTCAACGCGAAGCTTGGTGATTTTGGGCTAGCCAGGCTTGTTGATCATGGGAAAAAGTCACAAACCACAATTTTGGCAGGGACTATGGGGTACATGGCTCCTGAATGTCTTATGGCAGGCAATGCTAGCAAGGAATCCGGTGTCTACAGTTTTGGAGTTGTTGCTTTGGAAATTTGCTCTGGAAGAAAATCTGTGGAACCAAAAGCCAAGGAAAATCAGATCAAATTGGTGGAGTGGGTTTGGGCCCTTTATGGAGTAGGAAAGCTTCTTGAAGCAGCTGACCCAAGACTATCTGCAGACTTTGACGAGAAACAAATGGAACGCCTGATGATTGTGGGGCTTTGGTGCGCTCACCCAGACTGCAATCTTCGCCCTGCAATAAGGCAAGCAGTTAATGGCCTTAATTATCAAGCTTCATTGCCTATTCTCCCTTCAAACATGACTATGCCAATGTATTATGCTCCTCGAGCAAATACATATGCCTTCTCACTGCAAGCATGCTACACTGCTACCATTTCTGAAAGAGGCTAG 1275 0.4392 MAVCNAGIALLHSNTLPLLHIFMVSFFLSLMIPSANSSLSFSFNDFDPNCNQIHFEGQASYSGDKAIYLTRSQQEKKMNDSWGRATYREPFHLWDKASKRMADFSTNFSFGIDSQGKFSYGEGLAFFLAPYGTQLPSDVRGGSGLGLVSNNQQALNSEANHFFAVEFDTYPNDWDPKYDHVELLLVYDFMPNGCLASHLFEGKTLLTWAMRYKIATGLASALLYLHEEWEQCVVHRDVKSSNVILDADFNAKLGDFGLARLVDHGKKSQTTILAGTMGYMAPECLMAGNASKESGVYSFGVVALEICSGRKSVEPKAKENQIKLVEWVWALYGVGKLLEAADPRLSADFDEKQMERLMIVGLWCAHPDCNLRPAIRQAVNGLNYQASLPILPSNMTMPMYYAPRANTYAFSLQACYTATISERG* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1040 424 Pfam Protein kinase domain 178 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1040 424 FunFam Lectin-domain containing receptor kinase A4.3 190 402 - -
Vvi3g1040 424 CDD lectin_legume_LecRK_Arcelin_ConA 39 181 IPR001220 GO:0030246
Vvi3g1040 424 Gene3D Transferase(Phosphotransferase) domain 1 190 403 - -
Vvi3g1040 424 Pfam Legume lectin domain 38 182 IPR001220 GO:0030246
Vvi3g1040 424 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 183 IPR013320 -
Vvi3g1040 424 ProSiteProfiles Protein kinase domain profile. 76 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1040 424 SMART serkin_6 139 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1040 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vvi3g1040 424 Gene3D - 36 188 - -
Vvi3g1040 424 SUPERFAMILY Protein kinase-like (PK-like) 157 401 IPR011009 -
Vvi3g1040 424 PANTHER - 57 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1040 Vvi-Chr3 12205951 12207930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1040 182 401 Receptor kinase-like Gene Family AT5G10530 61.883 2.08e-88 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g1040 Pkinase 3.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1040 - - vvi:100241899 451.055