LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g1039	ATGGCTGTCTGCAACGCTGGTATTGCCCAAGTCCATTCAAGTACACTTCCTTTACTCCATATCTTCGTGGTCTCCTTTTTATTGTCTCTAAAGATCCCTTCTACGAATTCATCATTATCTTTCAGTTTTAATGATTTTGATCCTAATGGTAATCAAATTCATTTTGAGGGGCAGGCTTCTTATTCTGGTGATAAAGCCATCTACCTCACCAGAAACCAGCAGGAGAAAAAGATGAATGATAGTTGGGGTCGAGCTACATATCGTGAGCCGTTTCACCTTTGGGATAAGGCCTCGACAAGGATGGTTGATTTCTCTACCAATTTCTCATTTGGAATTGATTCCCTAGGTTATTTTCATGGTGAGGGACTCGCATTCTTTCTTGCTCCATACGGTACCCAACTGCCTTCAGTTGTGACAGGAGGCAGCGGCCTGGGTCTCGTGTCTAACAACCAGCAGGCACTAAACTCAACAGAAAATCACTTTTTTGCAGTGGAGTTTGATACTTATCCAAATGATTGGGATCCAAAACATGATCATGTTGGTATCAATATTAACTCCATGAAATCTGTGGAAAACATGACATGGAGTCATACTCTGGGAGGAAAAATAAATCATGTTTCCATCAGTTACGCTTCTAGTTCAAAAAATCTGAGTGTTATCTTTGGCACTGATGATTTGTATGATAACACCACTCCACAAAGCCTCTATTACAAAGTTAATCTGAGCAATTACTTGCCCGAATTCGTTACTATTGGCTTCTCAAGTGCAAGAAAAAATTCGTACGAGATAAACGTCATTTACTCATGGAGTTTCCGTTCATCAGATTTACAAATCTCTGATAGAGTAGTGGTGGGATTGAGTTTTGGCGTTTGTGCCCTGGTGGCCGGGTTGGGAATGGTTTTCTTTTGCTTGTGGAAGAAAGGGATAAGTGAGAAAGGGGTAGAAGATCCTGATTTTGACCTGTCCATGGTTGAAGATTTTGCAACGGGTACTGGGCCTCGGAAGTTTACGCGTCAAGAGTTGGTTCTTGCCACAAATAACTTTGCAGAGGCAGAGAAGCTTGGAGAGGGAGGGTTTGGTGGGGTTTATAAAGGTTTCTTGCGGAATCCAAGCTCCTACATTGCTGTTAAGAGGGTCTCAAGAGGGTCTGAACAAGGGGTAAAAGAGTATGCATCTGAAGTAAAGATCATCAGTAGATTGAGGCATCGGAACCTGGTGCAGCTAATGGGCTGGAGCCATAAAAAAAGAGAGCTTCTATTGGTATACGACTTCATGCCAAATGGTAGTTTGGCCTCTTGTTTATTTGAAGGAAAAACCTTGTTGACATGGGCAATGAGGTACAAAATTGCTACCGGATTGGCCTCAGCGTTGCTCTACCTGCATGAAGAATGGGAACAATGTGTTGTGCACAGAGATGTAAAATCGAGTAACGTGATGCTGGATACAGATTTCAACGCGAAGCTTAGTGATTTTGGGCTAGCCAGACTTGTTGATCATGGGAAAAGGTCACAAACCACAGTTTTGGCAGGGACTATGGGGTACATGGCTCCTGAATGTCTTATGAAAGGCAATGCTAGCAAGGAATCCGATGTCTACAGTTTTGGAGTTGTTGCTTTGGAAATTTGCTGTGGAAGAAAATCTGTGGAGCCAAAAGCCAAGGAAAATCAGATCAAATTGGTGGAGTGGGTTTGGACCCTTTATGGAGTAGGAAAGCTTCTTGAAGCAGCTGACCCAAGATTATGTGCAGACTTTGACGAGAAACAAATTGAACGCCTGATGATTGTGGGGCTTTGGTGTGCTCACCCAGACTGCAATATTCGGCCTGCAATAAGGCAAGCAGTTAATGTCCTTAATTATGAAGCTTCATTGCCTGTTCTCCCTTCAAACATGCCTGTGCCAATGTATTATGCTCCTCCAGAAAATACATATGCCTTTTCACTTCAAGCATCCTACACTGTTACCATTTCTGAGAGAGGCTAA	1980	0.4278	MAVCNAGIAQVHSSTLPLLHIFVVSFLLSLKIPSTNSSLSFSFNDFDPNGNQIHFEGQASYSGDKAIYLTRNQQEKKMNDSWGRATYREPFHLWDKASTRMVDFSTNFSFGIDSLGYFHGEGLAFFLAPYGTQLPSVVTGGSGLGLVSNNQQALNSTENHFFAVEFDTYPNDWDPKHDHVGININSMKSVENMTWSHTLGGKINHVSISYASSSKNLSVIFGTDDLYDNTTPQSLYYKVNLSNYLPEFVTIGFSSARKNSYEINVIYSWSFRSSDLQISDRVVVGLSFGVCALVAGLGMVFFCLWKKGISEKGVEDPDFDLSMVEDFATGTGPRKFTRQELVLATNNFAEAEKLGEGGFGGVYKGFLRNPSSYIAVKRVSRGSEQGVKEYASEVKIISRLRHRNLVQLMGWSHKKRELLLVYDFMPNGSLASCLFEGKTLLTWAMRYKIATGLASALLYLHEEWEQCVVHRDVKSSNVMLDTDFNAKLSDFGLARLVDHGKRSQTTVLAGTMGYMAPECLMKGNASKESDVYSFGVVALEICCGRKSVEPKAKENQIKLVEWVWTLYGVGKLLEAADPRLCADFDEKQIERLMIVGLWCAHPDCNIRPAIRQAVNVLNYEASLPVLPSNMPVPMYYAPPENTYAFSLQASYTVTISERG*	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g1039	659	SMART	serkin_6	348	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g1039	659	FunFam	L-type lectin-domain containing receptor kinase IX.1	333	424	-	-
	Vvi3g1039	659	CDD	lectin_legume_LecRK_Arcelin_ConA	39	274	IPR001220	GO:0030246
	Vvi3g1039	659	SUPERFAMILY	Concanavalin A-like lectins/glucanases	39	274	IPR013320	-
	Vvi3g1039	659	ProSitePatterns	Legume lectins alpha-chain signature.	245	254	IPR000985	-
	Vvi3g1039	659	SUPERFAMILY	Protein kinase-like (PK-like)	332	646	IPR011009	-
	Vvi3g1039	659	Gene3D	Phosphorylase Kinase; domain 1	333	424	-	-
	Vvi3g1039	659	Gene3D	-	36	283	-	-
	Vvi3g1039	659	FunFam	L-type lectin-domain containing receptor kinase IX.1	37	284	-	-
	Vvi3g1039	659	FunFam	Lectin-domain containing receptor kinase A4.3	425	637	-	-
	Vvi3g1039	659	ProSiteProfiles	Protein kinase domain profile.	348	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g1039	659	Pfam	Legume lectin domain	38	275	IPR001220	GO:0030246
	Vvi3g1039	659	Pfam	Protein kinase domain	349	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g1039	659	CDD	STKc_IRAK	354	618	-	-
	Vvi3g1039	659	PANTHER	-	57	621	-	-
	Vvi3g1039	659	ProSitePatterns	Protein kinases ATP-binding region signature.	354	377	IPR017441	GO:0005524
	Vvi3g1039	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	468	480	IPR008271	GO:0004672\|GO:0006468
	Vvi3g1039	659	Gene3D	Transferase(Phosphotransferase) domain 1	425	638	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g1039	Vvi-Chr3	12201022	12203001	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g1039	21	636	Receptor kinase-like Gene Family	AT5G10530	48.270	1.64e-177	518

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi3g1039		Pkinase	5.3e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g1039	-		-	vvi:100241899	1119.76