Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1038 ATGACGTTACAACCATTGAGTCCACAAGAGCAAAAGGATGCGTACCTCCCAGCAGAGTTGGGTGTGCCCAGCAAACAACCATCGAATTATTTCTGTAAAACATTGATAGCTAGTGACACAAGTACACATGGAGGCTTCTCTGTTCCTCGCCGAGCAGCTGAAAAAGTGTTTCCTTCTTTGGACTTTTCACAACAGCCTCCAGCCCAAGAGTTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTTAGGCATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACAACAGTTGGGCTTTAA 306 0.4346 MTLQPLSPQEQKDAYLPAELGVPSKQPSNYFCKTLIASDTSTHGGFSVPRRAAEKVFPSLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTVGL* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1038 101 SUPERFAMILY DNA-binding pseudobarrel domain 16 98 IPR015300 -
Vvi3g1038 101 CDD B3_DNA 30 98 IPR003340 GO:0003677
Vvi3g1038 101 Gene3D - 29 100 IPR015300 -
Vvi3g1038 101 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 98 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi3g1038 101 Pfam B3 DNA binding domain 31 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1038 Vvi-Chr3 12190207 12191959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1038 1 98 B3 DNA Binding Superfamily AT1G30330 90.816 3.86e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g1038 B3 6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1038 - - vvi:100855361 205.682