Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1036 ATGAATCGCAATTCAACAAACAACCTAAGAATGATGAGAACCGTTCAGTGGCTGCTTCAGATCTCCTTGTTACTATGGCTAAGCAAAGGATTAGCAGCAACTCAAGCGAAGCCTGGTTGTCAAGAGTGGTGTGGAGACGTTGACATTCCATACCCCTTCGGAATTGGATCTTCTGGTTGCTACTTCGATGAATGGTTCGAAGTAACTTGCAACAACTCTACCGACCCTCCTAAGCCTTTCCTGAAAGGAGTAAATCTGGAGGTGCTCAATGTTTCATTACATGGCACCGTCCGGGTCAACAACCCAGTACTCCTTTCTCAGAATTGTTCCGGCAAACCATCAAATGACACGCAGTGGTGGGAGGGAGGCCCCTTTTCATTCTCCAACACCTACACTAGATTCACTGCTGTGGGCTGCAGCGCCATGGCCTACTTTATGCAGGATGATACAGTAATCGGGGGATGCATGACCCTCTGCAAAAAGGACGTCCCAACTGCGGCAAAGAATGCCAGCTGCTATGGCTTGGAGTGTTGCCAAACCCAAGTCCCTCCAGGCCTCCTGTCCTTCACTGCAAATTTAGACACCTTTCCTGAAGGTAGTGCTGATGAGCAAGAACCATGCAAATACGCGTTCATGGTGGACCAAGAATGGTTCATCTCAAATGTACCAGATCCACATACGATGAAAGATATGGAATACGTTCCAGCAGTGCTGGACTGGCGGATATACAACGCAACGTGCGATGCCTCCACCTCAAACCTCAACACATCCACAAGTTTTTGTGGCGAGAATACCATTTGTTCAACTGACACTCAAACCTCAAGTCTCACCTGCAGCTGTCCCCCGGTATATGAAGGCAACCCTTATCTTCCCCAAGGATGTGAAGGTGAAACTCTTGATAAGCTATTGGCTAATAGGACGAGGGCCATAATGAATGCAACTCATCCTATCTATTTAGATGAAAGCGAACAACGTCACATAATGGTGTTACCAGTCATAGCAATAGGAGAGCTTGGAACATTACTTCTAGTAATTTGTGCATGGTGGTTGTACAAAGTACTAAAAAGGAGAAAGAAAATTAAGTACAAGAAGAAATGCTTTAATAGAAATGGTGGTTTACTCTTGGAACAACAATTATCTTCAAGTAAAGGAAATGTTGATAAAACCAAATTGTTCACTTCCAAAGAGTTGGAGAAAGCCACTGATCGTTATAATGAAAACCGAGTCATTGGACAAGGAGGCCAAGGTACTGTTTACAAAGGAATGTTGATGGATGGAAGAATTGTTGCAGTTAAAAAGTTGAAGATAATGAGTGATAGCAAACTTGAACAATTCATTAATGAGGTTGTCATTCTATGCCAAATTAATCACAGAAATGTGGTTAAGCTATTAGGATGTTGTTTGGAGACAGAAGTACCTTTGTTGGTCTATGAGTTCATTCCTAATGGAACCCTTTCTGAACATATCCATGGCCAAAATGAAGAATTCCCAATTACATGGGAAATGCGTCTTCAAATTGCTACTGAAGTTGCTAAAGCTCTTTCTTACTTGCATTCAGCAGCTTCTATACCAATCTATCATCGAGATATCAAATCAACTAACATACTTTTAGATGATAAATATCGAGCAAAAGTGGCAGACTTTGGAACTTCAAAATTTTTTTCCATTGATCAAACGCATTTGACCACCCAAGTACAAGGTACTTTTGGATACTTGGATCCAGAGTACTTCCAATCAAGCCAATTTACTGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTTATTGAGCTTTTAACTGGGAAAAAGCCAATCTTGTCAACTAGATCGGAAGAAAGGAAAAGTTTAGCCTTATATTTCAAAATATCCATGAAAGAAGATCATTTATCAGATCTTCTTGATGCTCGAGTTGTAAAAGAGGGTATGAAAGAAGATATCAATGAGATAGCTTTTCTTGCAAGACGATGCATAAACTTGAATGGGAAGAAAAGGCCTACAATGATGGAAGTTGCAATGGAGTTGGAAAGAATTAGAAAGTGTCAAGGAGATTTTAGAGCTCAAGAGAATTCTAAGGAGATTGAATACAACACCACTGAATTGATTGGGCCTTGA 2112 0.4105 MNRNSTNNLRMMRTVQWLLQISLLLWLSKGLAATQAKPGCQEWCGDVDIPYPFGIGSSGCYFDEWFEVTCNNSTDPPKPFLKGVNLEVLNVSLHGTVRVNNPVLLSQNCSGKPSNDTQWWEGGPFSFSNTYTRFTAVGCSAMAYFMQDDTVIGGCMTLCKKDVPTAAKNASCYGLECCQTQVPPGLLSFTANLDTFPEGSADEQEPCKYAFMVDQEWFISNVPDPHTMKDMEYVPAVLDWRIYNATCDASTSNLNTSTSFCGENTICSTDTQTSSLTCSCPPVYEGNPYLPQGCEGETLDKLLANRTRAIMNATHPIYLDESEQRHIMVLPVIAIGELGTLLLVICAWWLYKVLKRRKKIKYKKKCFNRNGGLLLEQQLSSSKGNVDKTKLFTSKELEKATDRYNENRVIGQGGQGTVYKGMLMDGRIVAVKKLKIMSDSKLEQFINEVVILCQINHRNVVKLLGCCLETEVPLLVYEFIPNGTLSEHIHGQNEEFPITWEMRLQIATEVAKALSYLHSAASIPIYHRDIKSTNILLDDKYRAKVADFGTSKFFSIDQTHLTTQVQGTFGYLDPEYFQSSQFTEKSDVYSFGVVLIELLTGKKPILSTRSEERKSLALYFKISMKEDHLSDLLDARVVKEGMKEDINEIAFLARRCINLNGKKRPTMMEVAMELERIRKCQGDFRAQENSKEIEYNTTELIGP* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1036 703 SMART serkin_6 404 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1036 703 CDD STKc_IRAK 410 677 - -
Vvi3g1036 703 Gene3D Phosphorylase Kinase; domain 1 372 479 - -
Vvi3g1036 703 ProSiteProfiles Protein kinase domain profile. 404 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1036 703 SUPERFAMILY Protein kinase-like (PK-like) 390 680 IPR011009 -
Vvi3g1036 703 Pfam Wall-associated kinase 169 266 IPR013695 GO:0004674|GO:0016020
Vvi3g1036 703 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 685 IPR045274 GO:0007166
Vvi3g1036 703 FunFam Wall-associated receptor kinase 2 480 697 - -
Vvi3g1036 703 Gene3D Transferase(Phosphotransferase) domain 1 480 699 - -
Vvi3g1036 703 FunFam Wall-associated receptor kinase 2 374 479 - -
Vvi3g1036 703 Pfam Wall-associated receptor kinase galacturonan-binding 40 100 IPR025287 GO:0030247
Vvi3g1036 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Vvi3g1036 703 Pfam Protein kinase domain 404 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1036 Vvi-Chr3 12180645 12199560 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1036 19 683 Receptor kinase-like Gene Family AT1G16130 45.138 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi3g1036 Pkinase 1.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1036 - - vvi:100854955 1187.94