Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1030 ATGTTGATGGATGGAAGAATTGTTGCAGTTAAAAAGTTGAAGATAATGAGTGATAGCAAACTTGAACAATTCATTAATGAGGTTGTAATTCTATGCCAAATTAATCACAGAAATGTGGTTAAGCTATTAGGATGTTGTTTGGAGACAGAAGTGCCTTTGTTGGTCTATGAGTTCATTCCTAATGGAACCCTTTCTGAACATATCCATGGCCAAAATGAAGAGTTCCCAATTACATGGGAAATACGTCTTCGAATTGCTACTGAAGTTGCTGGAGCTCTTTCTTACTTGCATTCAGCAGCTTCCGTACCAATCTATCATCGAGATATCAAATCAACTAACATACTTTTAGATGATAAATATCGAGCAAAAGTGGCAGACTTTGGAATTTCAAAATTTGTTGCCATTGATCAAACACATTTGACCACCCAAGTACAAGGTACTTTTGGATACTTGGATCCAGAGTACTTCCAATCAAGCCAATTTACTGAAAAAAGTGATGTCTACAGCTTTGGAATAGTTCTTATTGAGCTTTTAACTGGGAAAAAGCCAATCTTGTCAACTGCATCAGAAGAAGGGAAAAGTTTAGCCTCATATTTCATATTGTCCATGAATGAAGATCGTTTATCAGATCTTCTTGACGCTCAAGTTGTAAAAGAAAGTAGAAAAGAAGAGATTAATGCAATTGCTTTTCTTGCAAGACGATGCATAAACTTGAATGGGAAGAAAAGGCCTACAATGATGGAAGTTGCAATGGAGTTGGAAAGAATTAGAAAGTGTCAAGGAGATTTCGGAGCTCAAGAGAATTCTGAGGAGATTGAATACAACACCATTGAATTGATTGGACCTTGGGATGTTACCTCCATTTCAACAGATTCTTGCTTGAATACCAATGCATCTTCTTCATCGGATGTTTAA 915 0.365 MLMDGRIVAVKKLKIMSDSKLEQFINEVVILCQINHRNVVKLLGCCLETEVPLLVYEFIPNGTLSEHIHGQNEEFPITWEIRLRIATEVAGALSYLHSAASVPIYHRDIKSTNILLDDKYRAKVADFGISKFVAIDQTHLTTQVQGTFGYLDPEYFQSSQFTEKSDVYSFGIVLIELLTGKKPILSTASEEGKSLASYFILSMNEDRLSDLLDAQVVKESRKEEINAIAFLARRCINLNGKKRPTMMEVAMELERIRKCQGDFGAQENSEEIEYNTIELIGPWDVTSISTDSCLNTNASSSSDV* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1030 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Vvi3g1030 304 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 265 IPR045274 GO:0007166
Vvi3g1030 304 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Vvi3g1030 304 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1030 304 Gene3D Transferase(Phosphotransferase) domain 1 59 278 - -
Vvi3g1030 304 Pfam Protein tyrosine and serine/threonine kinase 7 253 IPR001245 GO:0004672|GO:0006468
Vvi3g1030 304 SMART serkin_6 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1030 304 CDD STKc_IRAK 2 256 - -
Vvi3g1030 304 PIRSF ILK 3 267 - -
Vvi3g1030 304 FunFam Wall-associated receptor kinase-like 10 1 58 - -
Vvi3g1030 304 FunFam Wall-associated receptor kinase 2 59 276 - -
Vvi3g1030 304 SUPERFAMILY Protein kinase-like (PK-like) 3 263 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1030 Vvi-Chr3 11916489 11917403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1030 1 304 Receptor kinase-like Gene Family AT1G79680 58.917 4.64e-125 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi3g1030 PK_Tyr_Ser-Thr 8.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1030 - - vvi:100854955 598.586