Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1028 ATGTTGATGGATGGAAGAATTGTTATAGTTAAAAAGTTGAAGATAGTGGGTGATAGAAAACTTGAACAATTCATTAAGGAGTTTGTCATTCTATCCCAAATTAATCATAGAAATGTGGTTAAGCTATTAGGATGTTTTTTGGAGATAGAAGTACCTTTGTTAGTCTATGAGTTCATTCCTAATGGAACCCTTTCTAAACATATCCATGGCCAAAATGAAAAAGATCAATGCGGTAGCTTTTCTTGCAAGACGATGCACAAACTTGAATGGGAGGAAAAAACCTACAATGATGGAAGTTGCAATGGAGTTGGAAAGCATGAGAAAGTGTCAAGGAGATTTTAG 342 0.348 MLMDGRIVIVKKLKIVGDRKLEQFIKEFVILSQINHRNVVKLLGCFLEIEVPLLVYEFIPNGTLSKHIHGQNEKDQCGSFSCKTMHKLEWEEKTYNDGSCNGVGKHEKVSRRF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1028 113 FunFam Wall-associated receptor kinase-like 10 1 58 - -
Vvi3g1028 113 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1028 113 Pfam Protein tyrosine and serine/threonine kinase 7 74 IPR001245 GO:0004672|GO:0006468
Vvi3g1028 113 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 89 IPR045274 GO:0007166
Vvi3g1028 113 Gene3D Transferase(Phosphotransferase) domain 1 2 95 - -
Vvi3g1028 113 SUPERFAMILY Protein kinase-like (PK-like) 3 75 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1028 Vvi-Chr3 11884720 11885474 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1028 1 73 Receptor kinase-like Gene Family AT1G79680 68.493 1.62e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi3g1028 PK_Tyr_Ser-Thr 8.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1028 - - vvi:100854955 126.716