Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1026 ATGGTCTTAGAGGCAACCTTCTCCCATTGCAACTTCACTTCCATTCAACAACCACTTGTAGGCATACTAGCAGGAGTTGGAACATTGCTTCTAGTAATTTGTGCATGGTGGTTGTACAAAGTACTAAAAAGGAGACAAAAAATTAAGTACAAGGAGAAATGCTTTAAAAGAAATGGTGGTTTACTTTTGGAACAACAATTATCTTCAAGTGAAGGAAATGTTGATAAAACCAAATTGTTCACTTCCAAAGAGTTGGAGAAAGCCACTGATCGTTATAATGAAAATCGGGTTATTGGTCAAGGAGGCCAAGGTACTGTTTACAAAGGAATGTTAATGGATGGAAGAATTGTTGCAGTTAAAAAGTTGAAGATAGTGGGCGATGGCAAAGTTGAGCAATTCATTAATGAGGTTGTCATTCTATCCCAGATTAATCATAGAAATGTGGTTAAACTGTTAGGATGTTGTTTGGAGACAGCAGTACCTTTGTTGGTCTATGAGTTCATTCCTAATGGAACCCTTTCTGAACATATCCATGACCAAAATGAAGAGTTCCCAATTACATGGGAAATGCGTCTTCGAATTGCTATTGAAGTTGCAGGAGCTCTTTCTTACTTGCATTCAGCAGCTTCCATACCAATCTATCACCGAGATATCAAATCAACTAACATACTTTTAGATGATAAATATCGAGCAAAAGTGGCAGACTTTGGAACTTCAAAATCTGTTGCCATTGATCAAACACATTTGACCACCCAAGTACAGGGTACTTTTGGATACTTGGACCCAGAGTACTTTCAATCAAGCCAATTTACTGAAAAAAGTGATGTCTATAGCTTTGGAATAGTTCTTATTGAGCTTTTAACTGGGAAAAAGCCAATCTTGTCAACTGCATCAGAAGAAGGGAAAAGTTTAGCCTCATATTTCATATTGTCCATGAATGAAGATCGTTTATCAGATCTTCTTGACGCTCAAGTTGTAAAAGAGGGTAAAAAAGAAGAGATCAATGCAATTGCTTTTCTTGCAAGACGATGCATAAACTTGAATGGGAAGAAAAGGCCTACAATGATGGAAGTTGCAATGGAGTTGGAAAGAATTAGAAAGTGTCAAGGAGATTTCAATGCTCAAGAAAATTTTGAGGAGGTTGGATACGACACCATTGAATTGACCGGGCCTTGGGATGTTGCCTCCACTTCAATGGGATCTTGCTTGAATACCAATGCATCTTCTTCATCGGATGTCCAACCTTTATTGTTTCAAAAGTCATTTTAA 1269 0.3759 MVLEATFSHCNFTSIQQPLVGILAGVGTLLLVICAWWLYKVLKRRQKIKYKEKCFKRNGGLLLEQQLSSSEGNVDKTKLFTSKELEKATDRYNENRVIGQGGQGTVYKGMLMDGRIVAVKKLKIVGDGKVEQFINEVVILSQINHRNVVKLLGCCLETAVPLLVYEFIPNGTLSEHIHDQNEEFPITWEMRLRIAIEVAGALSYLHSAASIPIYHRDIKSTNILLDDKYRAKVADFGTSKSVAIDQTHLTTQVQGTFGYLDPEYFQSSQFTEKSDVYSFGIVLIELLTGKKPILSTASEEGKSLASYFILSMNEDRLSDLLDAQVVKEGKKEEINAIAFLARRCINLNGKKRPTMMEVAMELERIRKCQGDFNAQENFEEVGYDTIELTGPWDVASTSMGSCLNTNASSSSDVQPLLFQKSF* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1026 422 FunFam Wall-associated receptor kinase 2 62 167 - -
Vvi3g1026 422 SMART serkin_6 92 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1026 422 SUPERFAMILY Protein kinase-like (PK-like) 73 362 IPR011009 -
Vvi3g1026 422 FunFam Wall-associated receptor kinase 2 168 384 - -
Vvi3g1026 422 Gene3D Phosphorylase Kinase; domain 1 63 167 - -
Vvi3g1026 422 CDD STKc_IRAK 98 365 - -
Vvi3g1026 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vvi3g1026 422 ProSiteProfiles Protein kinase domain profile. 92 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1026 422 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 369 IPR045274 GO:0007166
Vvi3g1026 422 Pfam Protein kinase domain 92 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1026 422 Gene3D Transferase(Phosphotransferase) domain 1 168 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1026 Vvi-Chr3 11870368 11872623 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1026 21 417 Receptor kinase-like Gene Family AT1G16130 59.000 1.52e-167 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi3g1026 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1026 - - vvi:100257661 786.949