Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1015 ATGGACATACAAGATTGTACAGAGTTAAATGAAATCCCGCAGATGCTTCCGCCTCCACCTGGAAGCTTTATAGATCGTGAAGAACTTATCCAACATGTTGGGGACTTTGCCTTATCCCAGGGCTATGTAGTTACCATTAAGCAGTCCAAGAAGGACAAAGTGGTAGTGCTTGGTTGTGACAGAGGGGGTGTTTACCGTAACAGGCGTAAACTTGTTGATGAAAGTTCTGCTGAACAGGTGCGCAAAAGAAAAACAGGTTCACGTCTTACAAATTGCCCTTTTGAAGTCGTGGGTAAAAAGGAAGATGGCTTGTGGGTACTTGCCATTAAAAATGGAGAACATAACCATGATCCCATCAGGGACATTTCAGAACACCCTTCATCTCGTCGCTTCACTGAGAGAGAAGTATTGCTTATTAAAGATATGACTGAAGCTGGTTTAAAACCGCGCCAAATTTTAAAGAGACTGAGACAAAACAATCCGGAGCTTTTATCAACACCAAAGCATGTTTACAATGTTAAAGCTAAGCTCCGACAAGGAAATTTAACAGTGAGGAACTTCAAGTCATTGAGAGTTAAATCATCTGTGGAAAATTCTCATATTTCAACAGCTAATGAGCCATCTTGGAGGCAACGCAATCCTCCAAGGGTTCCCAATCTCATTGGAGGTAGATTTGTTGATTCACAGTCATTTGCATCCATTGATGTTACAAATCCTGCAACACAGAAAGTTGTTTCTCAAGTCCCTTTAACCACCAATGAAGAATTCAGAGCTGCAATATTTGCTGCAAAACGAGCTTTTCCTTCATGGCGAGACACACCAGTTACCACCCGTCAACGTATCATGTTCAAATTCCAAGAACTCATTCGGAGAGATATTATTGCTATGAATATTACTACTGAACATGGAAAGACATTGAAGGATGCTTACACTGATGTACACCGTGGACTTGAGGTGGTGGAACATGCTTGTGGAATGGCGACTCTACAAATGGGGGAATTTGTTTCAAATGTATCAAATGGAATTGATACCTATAGCATTAGAGAGCCACTTGGTGTCTGTGCAGGGATTTGTCCATTCGATTTTCCAGCAATGATTCCCTTATGGATGTTTCCAATTGCAGTTACTTGTGGCAATACGTTCATTCTAAAGCCATCAGAGAAGGATCCAGGGGCTACTATTATACTTGCAGAGTTAGCAATGGAGGCTGGCTTGCCTAATGGTGTCTTAAACATTGTTCATGGCACTGTTGACATTATTAATGCCATTTGTGATGATGATGATATTAAAGCTATATCATTTGTTGGTTCAAACACAGATGGCATGTACATATATGCAAGGGCATCAGCTAAAGGGAAACGTGTGCAGTCTAATATAGGAGCCAAGAATCATGCAATTGTCATGCCTGATGCCAGCAAGGATGCTACCTTGAATGCACTAGTTTCTGCTGGTTTTGGTGCTGCAGGACAAAGATGCATGGTGCTCAGCACGGTAGTCTTTGTTGGAGGCTCAAAATCATGGGAAGATAAACTAGTGGAGTGTGCCAAGGCTCTTAAAGTAAATGCTGGAATAGAACCTGATGCAGACCTTGGTCCAGTGATTAGCAAACAGGTGAAGGAACGAATATGCAGATTGATCCAAGCTGGAGTGGACAGTGGTGCCAGACTCGTGCTTGACGGAAGAAATATTGAGGTTCCTGGATATGAGCATGGCAACTTTATTGGTCCTACCATCTTATCTGATGTGACAGCCAACATGTTGTGTTACAAGGAGGAAATATTTGGTCCAGTTCTTCTCTGCATGCAGGCTGACAACTTACAAGAAGCCATAAGCATTGTCAATAAAAACAAATATGGCATTGGGGCTTCTATATTCACCACATCTGGTGTAGCTGCGAGGAAATTTCAGACTGAGATTGAAGCTGGGGAGGTGGGCATAAATGTGCCAGTTCCAGACCCACTGCCGTTTTTCTCATTTACTGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTCTTTGGAAAGGCTGGAGTTCATTTTTACACCCAAATCAAAACAGTGACGCAACAATGGAAAGATTTACCTAGTGACAGTGGAGTATCCCTGATAATGCCAACTTGTGAGGGGTCATAA 2133 0.4233 MDIQDCTELNEIPQMLPPPPGSFIDREELIQHVGDFALSQGYVVTIKQSKKDKVVVLGCDRGGVYRNRRKLVDESSAEQVRKRKTGSRLTNCPFEVVGKKEDGLWVLAIKNGEHNHDPIRDISEHPSSRRFTEREVLLIKDMTEAGLKPRQILKRLRQNNPELLSTPKHVYNVKAKLRQGNLTVRNFKSLRVKSSVENSHISTANEPSWRQRNPPRVPNLIGGRFVDSQSFASIDVTNPATQKVVSQVPLTTNEEFRAAIFAAKRAFPSWRDTPVTTRQRIMFKFQELIRRDIIAMNITTEHGKTLKDAYTDVHRGLEVVEHACGMATLQMGEFVSNVSNGIDTYSIREPLGVCAGICPFDFPAMIPLWMFPIAVTCGNTFILKPSEKDPGATIILAELAMEAGLPNGVLNIVHGTVDIINAICDDDDIKAISFVGSNTDGMYIYARASAKGKRVQSNIGAKNHAIVMPDASKDATLNALVSAGFGAAGQRCMVLSTVVFVGGSKSWEDKLVECAKALKVNAGIEPDADLGPVISKQVKERICRLIQAGVDSGARLVLDGRNIEVPGYEHGNFIGPTILSDVTANMLCYKEEIFGPVLLCMQADNLQEAISIVNKNKYGIGASIFTTSGVAARKFQTEIEAGEVGINVPVPDPLPFFSFTGSKASFAGDLNFFGKAGVHFYTQIKTVTQQWKDLPSDSGVSLIMPTCEGS* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1015 710 Pfam Aldehyde dehydrogenase family 225 687 IPR015590 GO:0016491
Vvi3g1015 710 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 460 660 IPR016163 GO:0016620
Vvi3g1015 710 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 221 466 - -
Vvi3g1015 710 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 219 691 IPR010061 GO:0004491
Vvi3g1015 710 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 460 660 - -
Vvi3g1015 710 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 236 668 IPR016162 GO:0016491
Vvi3g1015 710 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 52 707 IPR010061 GO:0004491
Vvi3g1015 710 CDD ALDH_F6_MMSDH 217 691 IPR010061 GO:0004491
Vvi3g1015 710 SUPERFAMILY ALDH-like 211 693 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1015 Vvi-Chr3 11666805 11703195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1015 186 675 Aldehyde Dehydrogenase Gene Family AT2G14170 77.079 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1015 K00140 - vvi:100261145 1402.11