Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g1009 | ATGACTTTTCAGTTGAGGAGCACAAAGCCTAATGTTGAAGTGAAAGAGATCAAAGCACCTGCAGCACCGGAGAAAAAAGGGGAACAGTGGAAGTGTGAAGAGCCTAATGTTGCTCAAAAAGAGATCCAAGTAGTCAAAGTAACAGAGATAAAAAATGGGGGGGATGGAGCAAAGAGGTGTGAATGGTCTAATGCTGCTAAGGAGGAGGTCAAAGTGACAGAAGTAACACAGAGAACATTTGGTGGTACAGCACAGTGGGTTAAACAAACAGAGATAAATCTTGGTGAAACTAGAAGTAATACAACCTGTGCTGTGGAGATAAAAGAAAGGGCAGCAGCACTGGTGGCTGCAGAAATTGAGGCATGTAGAGACGATAGAACCCCCAAGATACCTCTTCATGAGAAAGTCCAGAAAGAGTGGGCTTGTGCTGTGTGCCAGTTCACAACCCAAACTGAAGCGACCTTCAATTCCCACCTTCAAGGGAAGAGACATCAGGCCATTTCTGAGCAGCTGAGAGCCAAAAATCAGGCAACCAAAACCAATTGTTCCCCATCTGCTTCAATGGCCAAGAAATCTGATCAGTCCACCAAAGAGGAGCAACCGAAGTGTACTTCCAATCTGAATTCCAAAAACAATGGAATCTCAGCTGCTTCAACAGTGAAGAAACTTGATGAGACCAAAGATGATGAGCAACAAAAGTCTGCATCTAGCAATGGACCGAACCAGAAGAATAACAAAAAGCAAGAGGTACAGACCAATGAGCAAGGCCGTCAGAAGAACTTAAGGCAAACTGGTGATGGAATGAAAGAGTTGAGATCATGGTGCAATATCTGTAATGTAAGCTGCACAAGGGAGCTTGACCTGGCCTCGCATCTCAATGGAAGGAGGCACTTTGATAGGATAAAGCAGCTGTCTGAATTATGGTGCAGTAACTGCAATGTAAGGTGCAACAGTGAGGTTGATATGGCCTCTCACCGAAATGGGAGGAGGCACTTGGAGCAGCTGAAGGAACGGTTAGGATTATGGTGCAGTATCTGTAGTGTGAATTGTGTTAGGAGGAGCTGGAATGGGTTCAAATCAGGAATTAAGACCCAGTTCCAAGACATGGAAAGTGTCTTTAGATTATGTTAA | 1131 | 0.4447 | MTFQLRSTKPNVEVKEIKAPAAPEKKGEQWKCEEPNVAQKEIQVVKVTEIKNGGDGAKRCEWSNAAKEEVKVTEVTQRTFGGTAQWVKQTEINLGETRSNTTCAVEIKERAAALVAAEIEACRDDRTPKIPLHEKVQKEWACAVCQFTTQTEATFNSHLQGKRHQAISEQLRAKNQATKTNCSPSASMAKKSDQSTKEEQPKCTSNLNSKNNGISAASTVKKLDETKDDEQQKSASSNGPNQKNNKKQEVQTNEQGRQKNLRQTGDGMKELRSWCNICNVSCTRELDLASHLNGRRHFDRIKQLSELWCSNCNVRCNSEVDMASHRNGRRHLEQLKERLGLWCSICSVNCVRRSWNGFKSGIKTQFQDMESVFRLC* | 377 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g1009 | 376 | MobiDBLite | consensus disorder prediction | 173 | 265 | - | - | |
| Vvi3g1009 | 376 | SUPERFAMILY | beta-beta-alpha zinc fingers | 305 | 337 | IPR036236 | - | |
| Vvi3g1009 | 376 | Gene3D | Classic Zinc Finger | 257 | 303 | - | - | |
| Vvi3g1009 | 376 | PANTHER | OS06G0651300 PROTEIN-RELATED | 85 | 304 | - | - | |
| Vvi3g1009 | 376 | MobiDBLite | consensus disorder prediction | 173 | 191 | - | - | |
| Vvi3g1009 | 376 | MobiDBLite | consensus disorder prediction | 199 | 219 | - | - | |
| Vvi3g1009 | 376 | Gene3D | Classic Zinc Finger | 124 | 170 | - | - | |
| Vvi3g1009 | 376 | Gene3D | Classic Zinc Finger | 304 | 339 | - | - | |
| Vvi3g1009 | 376 | SMART | ZnF_U1_5 | 305 | 338 | IPR003604 | GO:0003676|GO:0008270 | |
| Vvi3g1009 | 376 | SMART | ZnF_U1_5 | 270 | 304 | IPR003604 | GO:0003676|GO:0008270 | |
| Vvi3g1009 | 376 | SMART | ZnF_U1_5 | 137 | 171 | IPR003604 | GO:0003676|GO:0008270 | |
| Vvi3g1009 | 376 | SUPERFAMILY | beta-beta-alpha zinc fingers | 263 | 304 | IPR036236 | - | |
| Vvi3g1009 | 376 | SMART | c2h2final6 | 273 | 297 | IPR013087 | - | |
| Vvi3g1009 | 376 | SMART | c2h2final6 | 140 | 164 | IPR013087 | - | |
| Vvi3g1009 | 376 | SMART | c2h2final6 | 307 | 331 | IPR013087 | - | |
| Vvi3g1009 | 376 | MobiDBLite | consensus disorder prediction | 233 | 262 | - | - | |
| Vvi3g1009 | 376 | Pfam | Zinc-finger of C2H2 type | 308 | 331 | - | - | |
| Vvi3g1009 | 376 | Pfam | Zinc-finger of C2H2 type | 274 | 297 | - | - | |
| Vvi3g1009 | 376 | Pfam | Zinc-finger of C2H2 type | 140 | 164 | - | - | |
| Vvi3g1009 | 376 | SUPERFAMILY | beta-beta-alpha zinc fingers | 121 | 176 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g1009 | Vvi-Chr3 | 11421788 | 11424852 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi3g1009 | 134 | 297 | C2H2 Transcription Factor Family | AT2G19380 | 25.000 | 5.09e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g1009 | - | - | vvi:100247569 | 669.077 |