Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1002 ATGAGTGATGCTGAAGATGGTAGTGATGAAGGATCAGAGAGTGAAGAAGGTACCTGCATCTCTTCTATTCAACCAGGAAAAAAGAGGCCAACTGAATCTGCCACAAAAACACCTGTTCCTGCTAAAAAGGCTAAATTAGTTTCACCTCAAAACACAGATGGTAAGAAGGGTGGGGCTCATACAGCAACTCCTCATCCTAACAAGAAGGCGGGGAAAACTCCTGCTACCGGTGACAAAGGCAAGGAGCAGAGCCCAAAATCTGGTGGCCAAGTCTCTTGCAAATCTTGCAGCAAGACATTCAACTCAGAAAATGCGCTTCAATCCCATTCCAAGACTAAGCATGGTGTCTCTTAG 354 0.4548 MSDAEDGSDEGSESEEGTCISSIQPGKKRPTESATKTPVPAKKAKLVSPQNTDGKKGGAHTATPHPNKKAGKTPATGDKGKEQSPKSGGQVSCKSCSKTFNSENALQSHSKTKHGVS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1002 117 MobiDBLite consensus disorder prediction 1 117 - -
Vvi3g1002 117 MobiDBLite consensus disorder prediction 14 31 - -
Vvi3g1002 117 SUPERFAMILY beta-beta-alpha zinc fingers 85 113 IPR036236 -
Vvi3g1002 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 117 IPR013087 -
Vvi3g1002 117 ProSitePatterns Zinc finger C2H2 type domain signature. 93 114 IPR013087 -
Vvi3g1002 117 Gene3D Classic Zinc Finger 80 115 - -
Vvi3g1002 117 Pfam Zinc-finger double-stranded RNA-binding 92 113 IPR022755 -
Vvi3g1002 117 MobiDBLite consensus disorder prediction 83 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1002 Vvi-Chr3 11323186 11324679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1002 33 114 C2H2 Transcription Factor Family AT5G03740 52.326 5.32e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi3g1002 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1002 - - vvi:100256817 189.889