Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0997 ATGTTTTCAGCTCCAGAGAATTCAAGTCATTTTGATGCGCCTCATTTACCTCAGCATTATGATGGCTCTGCTATGTTCTATGGGATTCGCCTTCATCATCCACTCCCAAGTCTTGATATAGCTGTTGCTCCTCGATCCAACATTCATGATCGAAAGAATGCTCAAGGCATCCTGGGGAATTTTCACTATTTTAATGGCTTTGCAAGCTCTAGTTCTTCGGCTCCCCCTTTCAATACAAGGCATCTTGAATTCGGGGTTCCCGTGATGGATTCTGCATCTTTGGCCTTTGCCCAGCCGCAGTACAGAGGGAATAATGCTCCTTCAATCATGGAAGTAGGATCTCACAGAAGTGTGAGGAACAGATCAGGTGCTGTTGGGCCGGATTCTGTTCTGGCACATAATCATTACCATTTGGTGCAAGGAAACCATATTGGCCATCCTTTTCAGCCTTCTGGCAATCCCTGGGTTGACCAACAATCAGGCAATAATGGTAGTGGTGGGGGAACTTTGGCCTGGAATCATGGACTTGCTTTACCTTATTTGCATGGGAGCAATATCAGTGGAGGTTCTAGAGAGGCTGGGAATGTGGGTATACAGGGATATCATGATACATCTAGTGGCAGAAGTTCCACAGATTACCTTCAACCTCCTGTCCTTCACCGGCACCATAATCTTCATTATCCACCACCACCACCACCACCACCTATGCAAGGAGCAAGAAGACATTTCCACCCTCAAGTAGTGGCATCTTCTTATAGACTTGCCACGATTAGTTCACGTAGTCCTGAGCCTCCTCAGGTTGGTGCAGAGGCAGGGCACAGGCATCCAGGACCTGTTCCACCTACTTGGATCAGGATAGATCGATCTCATCAAGGGGGAGTCGCACCTGAGGCAACATCGAGACATGGTAATCTGCCTTACTTGAGAACGCTCCCAGAAGAAGAAGTTGCCATACTAGATCTTTCAGCATCTTATCAAGTAGGGGAAGTAGGCACAGGGCTTTCAGAGGAATCCATTACAAATTGTCTAAAAACTAGAACTTATATATCTTCAACTTGTCTGAATCTGGAAGAGGGTGCAAGTATGGATCAGGAAAAGGATTCTTGCATTATATGCCAGGAGGAGTATGAGAATGAAGAGAAGATTGGATTTCTTGATTGTGGGCATGAGTACCATGCAGATTGCTTGAAGAAGTGGGTGCTGGTGAAGAATGTGTGCCCCCTCTGCAGAGCCCCAGCAATGACCCCAAAAAAGGAGGATGTATAG 1266 0.4645 MFSAPENSSHFDAPHLPQHYDGSAMFYGIRLHHPLPSLDIAVAPRSNIHDRKNAQGILGNFHYFNGFASSSSSAPPFNTRHLEFGVPVMDSASLAFAQPQYRGNNAPSIMEVGSHRSVRNRSGAVGPDSVLAHNHYHLVQGNHIGHPFQPSGNPWVDQQSGNNGSGGGTLAWNHGLALPYLHGSNISGGSREAGNVGIQGYHDTSSGRSSTDYLQPPVLHRHHNLHYPPPPPPPPMQGARRHFHPQVVASSYRLATISSRSPEPPQVGAEAGHRHPGPVPPTWIRIDRSHQGGVAPEATSRHGNLPYLRTLPEEEVAILDLSASYQVGEVGTGLSEESITNCLKTRTYISSTCLNLEEGASMDQEKDSCIICQEEYENEEKIGFLDCGHEYHADCLKKWVLVKNVCPLCRAPAMTPKKEDV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0997 421 MobiDBLite consensus disorder prediction 194 213 - -
Vvi3g0997 421 CDD RING-H2_RNF24-like 367 413 - -
Vvi3g0997 421 ProSiteProfiles Zinc finger RING-type profile. 369 410 IPR001841 -
Vvi3g0997 421 FunFam Uncharacterized protein 355 420 - -
Vvi3g0997 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 420 IPR013083 -
Vvi3g0997 421 MobiDBLite consensus disorder prediction 199 213 - -
Vvi3g0997 421 Pfam Ring finger domain 367 410 IPR001841 -
Vvi3g0997 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 51 414 IPR045191 GO:0061630
Vvi3g0997 421 SMART ring_2 369 409 IPR001841 -
Vvi3g0997 421 SUPERFAMILY RING/U-box 364 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0997 Vvi-Chr3 11239832 11241097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0997 321 414 C3H Transcription Factor Family AT2G15530 42.553 4.23e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0997 K19041 - vvi:100257670 839.336