Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0979 ATGGAACTTAACTCCTTCCTCTTGCTTTGCATGCCACTGGTCCTGTGCCTCTTCTTCCTTCAATTTCTGCGCCCATCATCCCACGCTACCAAGCTACCGCCTGGCCCGACTGGCCTCCCCATTTTGGGCTCCCTACTCCAAATTGGCAAACTTCCTCATCACTCACTTGCAAGATTGGCGAAAATCCACGGTCCTCTCATCACCCTCCGCCTTGGGTCCATCACCACCGTCGTCGCCTCCTCTCCCCAGACAGCCAAACTAATTCTCCAAACACATGGCCAGAATTTCCTGGACCGTCCTGTTCCCGAGGCCATCGACAGTCCTCAAGGCACAATCGCATGGACTCCTGTGGACCATGTATGGCGCAGCCGCCGCCGTGTTTGCAACAACCACTTGTTCACATCCCAGAGCCTGGACTCACTCCAACACCTTCGATACAAAAAGGTGGAACAACTTCTCCAACATATCCGTAAGCATTGTGTTTCCGGTACACCAGTGGATATCGGCCTACTCGCCTCTGCCACCAACTTGAACGTGCTATCAAACGCCATTTTCTCTGTTGACCTTGTTGATCCAGGATTTGAGTCGGCTCAGGATTTCAGGGATCTGGTGTGGGGAATCATGGAGGGTGCTGGCAAGTTTAATATTTCAGATTATTTTCCCATGTTTCGAAGGTTCGATTTGCTAGGTGTGAAGCGTGACACTTTTTCATCTTATAGAAGGTTTTATGAAATAGTTGGTGATATAATCAAAAGCCGTATCAAGTGTAGAGCCTCCAATCCAGTGACCAGGAATGACGATTTCTTGGATGTGATTCTCGATCAGTGCCAAGAAGATGGTTCTTTATTCGATTCTGAAAATATCCAGGTTTTGATTGTGGAATTGTTTTATGCTGGAAGTGATACATCTACCATAACAACTGAATGGGCAATGACTGAATTTCTTCGAAATCCAGGGGTGATGCAAAAGGTTCGGCAGGAACTTAGCGAAGTAATCGGGGCAGGTCAAATGGTTAGAGAATCAGATATGGATCGACTTCCATATTTTCAAGCTGTTGTGAAAGAGACACTCAGACTCCATCCGGCTGGGCCCCTTCTGTTACCTTTTAAAGCAAAGAATGATGTGGAATTATCCGGTTTCACCATACCCAGTAACAGTCATGTCCTTGTGAATATGTGGGCTATTGCAAGAGATCCAAGTTATTGGGAGGATCCTTTATCCTTCCTTCCTGAAAGATTCTTGGGCTCTAAGATAGATTATAGAGGCCAAGATTTTGAATATATACCATTTGGAGCTGGTAGGCGAATCTGCCCAGGCATGCCTCTTGCCGTCAGAATGGTTCAACTAGTGTTAGCTTCCATTATCCACTCCTTCAACTGGAAGCTTCCTGAAGGAACAACCCCACTGACCATTGACATGCAAGAACATTGCGGAGCTACCTTGAAGAAGGCCATTCCTCTTTCTGCCATTCCATTTATAGAAGAAAATTAA 1491 0.4648 MELNSFLLLCMPLVLCLFFLQFLRPSSHATKLPPGPTGLPILGSLLQIGKLPHHSLARLAKIHGPLITLRLGSITTVVASSPQTAKLILQTHGQNFLDRPVPEAIDSPQGTIAWTPVDHVWRSRRRVCNNHLFTSQSLDSLQHLRYKKVEQLLQHIRKHCVSGTPVDIGLLASATNLNVLSNAIFSVDLVDPGFESAQDFRDLVWGIMEGAGKFNISDYFPMFRRFDLLGVKRDTFSSYRRFYEIVGDIIKSRIKCRASNPVTRNDDFLDVILDQCQEDGSLFDSENIQVLIVELFYAGSDTSTITTEWAMTEFLRNPGVMQKVRQELSEVIGAGQMVRESDMDRLPYFQAVVKETLRLHPAGPLLLPFKAKNDVELSGFTIPSNSHVLVNMWAIARDPSYWEDPLSFLPERFLGSKIDYRGQDFEYIPFGAGRRICPGMPLAVRMVQLVLASIIHSFNWKLPEGTTPLTIDMQEHCGATLKKAIPLSAIPFIEEN* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0979 496 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 FunFam Cytochrome P450 76C4 24 490 - -
Vvi3g0979 496 CDD CYP76-like 60 491 - -
Vvi3g0979 496 SUPERFAMILY Cytochrome P450 28 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 11 492 - -
Vvi3g0979 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Vvi3g0979 496 Pfam Cytochrome P450 33 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0979 496 Gene3D Cytochrome P450 21 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0979 Vvi-Chr3 10701301 10703180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0979 6 491 Cytochrome P450 AT2G45550 42.137 1.87e-138 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0979 - - vvi:100245631 989.949