Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0958 ATGGGAAGAGGGAAGATTGTGATCCGAAGGATCGATAATTCAACGAGCAGGCAAGTGACTTTCTCGAAACGAAGAAATGGATTGCTTAAGAAGGCTAAGGAGCTGTCAATACTATGTGATGCAGAAGTTGGCCTGGTCATCTTCTCCAGCACTGGCAAGCTTTATGATTATGCAAACACTAGCGTGAATTCCGTAATCGATCGATACAACAAATTGAAGGAGGAACAGCACCAAGTGTTGAACCCGGCTTCGGAAGTCAAGGTAAATCCTTTATGA 276 0.4384 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVIFSSTGKLYDYANTSVNSVIDRYNKLKEEQHQVLNPASEVKVNPL* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0958 91 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vvi3g0958 91 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi3g0958 91 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi3g0958 91 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi3g0958 91 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi3g0958 91 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi3g0958 91 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 76 - -
Vvi3g0958 91 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi3g0958 91 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi3g0958 91 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi3g0958 91 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Vvi3g0958 91 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0958 Vvi-Chr3 9989553 10006095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0958 1 87 MADS-box Gene Family AT2G14210 82.955 5.24e-49 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g0958 SRF-TF 4.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0958 K09264 - vvi:100244955 171.4