Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0956 ATGAATGATAGTTGGGGTCGAGCTACATACTGTAAGCCGTTTCAACTCTGGGATAAGGCCTCCGGAAGAATGGCTGATTTCACTACCAATTTCTCCTTTGAAATTGATTCTCAAAGAAACTTTTCTTATGGTGATGGACTCGCATTCTTTCTTGCTCCAAACAGTACCCGACTGCCTTCAGATGTGACAGGAGGCAGCCTGGGTCTTGTGTCTAGGAACCAGACGCTGAACTCAACAGCCAATCACTTTTTTGCAGTGGAGTTTGATACTTTTCCAAATGCTTGGGATCCAAAACATGATCATGTTGGTATCGACATTAACTCCATGAAATCTGCAAAAAGCGTGACATGGTTGAATAATATTCCGGAAGGAAAAATAAATCATGTTTCCATCAGCTACGATTCTAGTTCCGAAAATCTGAGTGTTATCTTTGGCACTGATGATTTGTATAATAACATCACTCCACAAAGCCTCTATTACAAAGTTGATCTGAGGAATTACTTGACTCCATTCGTTACTATTGGCTTCTCAAGTGCAACAGGAGATAGGTCCGAGATAAACATCATTCACTCATGGAATTTCAGTTCAGCTTTAATTTTCTCTGATAGTGCAGAGGAAAACGAAGAAAAGAAGACAGGACTAGTGGTGGGATTGGGTGTTGGCGCTTTTGCCCTGGTGGCTGGGTTGGGATTGGTCTGCTTTTGCTGGTGGAAGAAAAAGATAAGTGAGAAAGGAGAAGCCGATCCTGATTTTGACCTGTCCATGGATGACGATTTTGAAAAGGGTACTGGGCCTCGGAAGTTTATGTATCATGAGTTGGTTCTTGCCACAAATAACTTTGCAGAGGGAGAGAAGGTTGGAGAGGGAGGGTTTGGTGGGGTCTACAAAGGTTTCTCGAGTAATCTAAGCTCCTACGTTGCTGTCAAAAGGGTATCAAAAGGGTCCAACCCAGGGATAAAGGAGTATGCATCTGAAGTAAAGATCATCAGTAGGTTGAGACATCGGAATCTGCTTCAGCTGTTGGGCTGGTGCCATAAGAAAAGAGAGCTTCTATTGGTTTACGAGTTCATACCCAATGGTAGTTTGGCTTCTTGTTTGTTTCAAGGGAAAACCTTGTTGACATGGGCAACGAGGTACAAAATTGCTACTGGATTGGCCTCGGCGTTGCTCTACCTGCATGAAGAATGGGAACAATGTGTTGTGCATAGAGATATAAAATCCAGTAATGTTATGCTGGATGCGGAATTCAATGCTAAGCTTGGTGATTTCGGGCTAGCCAGGCTTGTTGATCATGGGAAAGAGTCACAAACCACAGTTTTGGCAGGGACAATGGGGTACATGGCTCCTGAATGTATCATGACGGGCAAGGCTAGCAAGGAATTGGATGTCTACAGTTTTGGAGTTGTTGTGTTAGAAATTTGCAGTGGAAGAAGATGTGTAGAACCAAAAGCACAAGAAGATCAGATCAGATTGGTGGAGTGGATTTGGAACCTTTATGGAGTAGGAAAGCTTCTTGAAGCAGCTGACTCAAGACTATCTGCAGATTTTGATGAGGAACAAATGGTACGCCTGATGGTTGTTGGGCTTTGGTGTGCTTACCCAGACTGCAGTCTTCGTCCCTCAATAAGGCAAGCAATTAATGTCCTTGATTCTGAAGCTTCGTTGCCTGCTCTCCCTTCAAAGATGCCCCTGCCAATGTATTATGCTTCTCCAGAAAATACGTCTGCCATTTCGCTTCAAGCATCCTATACTGCTACCACTTCTGAGAGAGGCCAATCCCAGCTTTCAGGATTTTCTATTGGAACAAACTCAGGACTGTTTGGTATTTGGGAATAG 1836 0.4357 MNDSWGRATYCKPFQLWDKASGRMADFTTNFSFEIDSQRNFSYGDGLAFFLAPNSTRLPSDVTGGSLGLVSRNQTLNSTANHFFAVEFDTFPNAWDPKHDHVGIDINSMKSAKSVTWLNNIPEGKINHVSISYDSSSENLSVIFGTDDLYNNITPQSLYYKVDLRNYLTPFVTIGFSSATGDRSEINIIHSWNFSSALIFSDSAEENEEKKTGLVVGLGVGAFALVAGLGLVCFCWWKKKISEKGEADPDFDLSMDDDFEKGTGPRKFMYHELVLATNNFAEGEKVGEGGFGGVYKGFSSNLSSYVAVKRVSKGSNPGIKEYASEVKIISRLRHRNLLQLLGWCHKKRELLLVYEFIPNGSLASCLFQGKTLLTWATRYKIATGLASALLYLHEEWEQCVVHRDIKSSNVMLDAEFNAKLGDFGLARLVDHGKESQTTVLAGTMGYMAPECIMTGKASKELDVYSFGVVVLEICSGRRCVEPKAQEDQIRLVEWIWNLYGVGKLLEAADSRLSADFDEEQMVRLMVVGLWCAYPDCSLRPSIRQAINVLDSEASLPALPSKMPLPMYYASPENTSAISLQASYTATTSERGQSQLSGFSIGTNSGLFGIWE* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0956 611 CDD STKc_IRAK 286 550 - -
Vvi3g0956 611 Gene3D Transferase(Phosphotransferase) domain 1 357 571 - -
Vvi3g0956 611 SMART serkin_6 280 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0956 611 CDD lectin_legume_LecRK_Arcelin_ConA 1 198 IPR001220 GO:0030246
Vvi3g0956 611 Gene3D - 1 211 - -
Vvi3g0956 611 FunFam L-type lectin-domain containing receptor kinase IX.1 1 207 - -
Vvi3g0956 611 SUPERFAMILY Protein kinase-like (PK-like) 264 582 IPR011009 -
Vvi3g0956 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Vvi3g0956 611 Pfam Legume lectin domain 2 206 IPR001220 GO:0030246
Vvi3g0956 611 ProSitePatterns Protein kinases ATP-binding region signature. 286 309 IPR017441 GO:0005524
Vvi3g0956 611 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 198 IPR013320 -
Vvi3g0956 611 ProSiteProfiles Protein kinase domain profile. 280 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0956 611 Pfam Protein kinase domain 281 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0956 611 FunFam Lectin-domain containing receptor kinase A4.3 357 569 - -
Vvi3g0956 611 PANTHER - 4 563 - -
Vvi3g0956 611 Gene3D Phosphorylase Kinase; domain 1 265 356 - -
Vvi3g0956 611 FunFam L-type lectin-domain containing receptor kinase IX.1 265 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0956 Vvi-Chr3 9890581 9892416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0956 6 568 Receptor kinase-like Gene Family AT5G10530 50.960 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0956 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0956 - - vvi:100265547 1193.33