LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0955	ATGGCTGCCTGCAACGCTGGTATTGCCCAACTCCATTCCTATACACTTCCTTTCCTCCATATCTTCATGATCTCCTTTTTCTCGTCTCTAATGGTCCATTCTGGGAATTCATTATCCTTCAATTTGGGCAATTTTGATCCGAATGATCATGAAATTATTTTTGAGGGGCATGCTTCTTATTCTGCTGATAAAGTCATCCAACTCACCAGCAACCAGGAGGACAAAAAGATGAATGATAGTTGGGTTCGAGCTACATACTATAAGCCGTTTCAACTCTGGGATAAGGCCTCCGGAAGAATGGCTGATTTCACTACCAATTTCTCCTTTGAAATTGATTCTCAAAGAAACTCTTCTTATGGTGATGGACTCGCATTCTTTCTTGCTCCAAACAGTACCCAACTGCCTTCAGATGTGACAGGAGCCAGCGGCCTGGGTCTTGTGTCTAACAACCAGACGCTGAACTCAACAGCAAAACACTTTTTTGCAGTGGCTTTTGATACTTTTCCAAATGCTTGGGATCCAAAACCCGATCATGTTCGTATCGATATTAACTCCATGAAATCTGTGAAAAACGTGACATGGTTGAGTATTATTAAGGATGGAAAAATAAAATATGTTTCCATCAGCTATACTGCTAGTTCTCAAAATATGAGTGTTATATTTGGCTCTGATTATTTGTATAATAAAACCACTCTACAAAGCCTCTATTACAAAGTTGATCTGAGCGATTATTTGCCTGAATTCGTTACTATTGGCTTCTCAAGTGCAACAGGAGATTTTTCCGAGATAAACATCATTCACTCATGGAATTTCAGTTCGGCTTTACAAATCTCTGATAGTGCAGAGGAAAACGAAGAAAAGAAGACAGGACTAGTGGTGGGATTGAGTGTTGGCGCTTTTGCCCTGGTGGCTGGGTTGGGATTGGTCTGCTTTTGCTTGTGGAAGAAAAAGGTAAGTGAGAAAGGAGAAGATAATCCTGATTTTGACCTGTCCATGGATGACGACCTTGAAAAGGGTACTGGGCCTCGGAAGTTTATGTACCATGAGTTGGTTCTTGCCACAAATAACTTTGCAGAGGGAGAGAAGGTTGGAGAGGGAGGGTTTGGTGGGGTCTATAAAGGTTTCTCGAGGAATCTAAGCTCCTACATTGCCGTTAAAAGGGTATCAAAAGGGTCCGACCAAGGGATAAAGGAGTATGAATCTGAAGTAAAGATCATCAGTAGGTTGAGACATTGGAATCTTCTGCAGCTGTTGGGCTGGTGCCATAAGAAAAGAGAGCTTCTATTGGTTTACGAGTTCATGCCTAATGGTAGTTTGGCTTCTTGTTTGTTTCAAGGCAAAATCTTGTTGACATGGGCAATGAGATACAAAATTGCTACTGGGTTGGCCTCGGTGTTGCTCTACCTGCACGAAGAATGGGAACAATGTGTTGTGCATAGAGATGTAAAATCCAGTAATGTTATGCTGGATGCGGAATTCAATGCGAAGCTTGGTGATTTCGGGCTAGCCAGGCTTGTTGATCATGGGAAAGGGTCAAAAACCACAGTTTTGGCAGGGACAGTGGGGTATATGGCTCCTGAATATATCTTGACGGGCAAGGCTAGCAAGGAATTGGATGTCTACAGTTTCGGAGTTGTTGCTTTGGAAATTTGCAGTGGAAGAAGATGTGTAGAACCAAATGCCCAAGAAGATCAGATCAGATTGGTGGAGTGGGTTTGGGACCTTTATGGAGTAGGAAAGCTTCCTGAAGCAGCTGACCCAAGACTATCTGCAGATTTTGATGAGGAACAAATGGCACGCCTGATGGTTGTTGGGCTTTGGTGTGCTCACCCAGACTGCAGTCTTCGTCCCTCAATAAGGCAAGCAATTAATGTCCTTAATTCTGAAGCCTCATTGCCTGCTCTCCCTTCAAAGATGCCTGTGCCAATGTATTATGCTCCTCCAGAAAATAATTCTGCCATTTCATCACTTCAAACATCCTATACTGCTACCACTTCTGAGAGAAGCCAATCCTAG	2016	0.4291	MAACNAGIAQLHSYTLPFLHIFMISFFSSLMVHSGNSLSFNLGNFDPNDHEIIFEGHASYSADKVIQLTSNQEDKKMNDSWVRATYYKPFQLWDKASGRMADFTTNFSFEIDSQRNSSYGDGLAFFLAPNSTQLPSDVTGASGLGLVSNNQTLNSTAKHFFAVAFDTFPNAWDPKPDHVRIDINSMKSVKNVTWLSIIKDGKIKYVSISYTASSQNMSVIFGSDYLYNKTTLQSLYYKVDLSDYLPEFVTIGFSSATGDFSEINIIHSWNFSSALQISDSAEENEEKKTGLVVGLSVGAFALVAGLGLVCFCLWKKKVSEKGEDNPDFDLSMDDDLEKGTGPRKFMYHELVLATNNFAEGEKVGEGGFGGVYKGFSRNLSSYIAVKRVSKGSDQGIKEYESEVKIISRLRHWNLLQLLGWCHKKRELLLVYEFMPNGSLASCLFQGKILLTWAMRYKIATGLASVLLYLHEEWEQCVVHRDVKSSNVMLDAEFNAKLGDFGLARLVDHGKGSKTTVLAGTVGYMAPEYILTGKASKELDVYSFGVVALEICSGRRCVEPNAQEDQIRLVEWVWDLYGVGKLPEAADPRLSADFDEEQMARLMVVGLWCAHPDCSLRPSIRQAINVLNSEASLPALPSKMPVPMYYAPPENNSAISSLQTSYTATTSERSQS*	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0955	671	SUPERFAMILY	Concanavalin A-like lectins/glucanases	38	275	IPR013320	-
	Vvi3g0955	671	Pfam	Protein kinase domain	358	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0955	671	ProSitePatterns	Legume lectins alpha-chain signature.	245	254	IPR000985	-
	Vvi3g0955	671	Pfam	Legume lectin domain	37	286	IPR001220	GO:0030246
	Vvi3g0955	671	FunFam	L-type lectin-domain containing receptor kinase IX.1	36	284	-	-
	Vvi3g0955	671	CDD	STKc_IRAK	363	627	-	-
	Vvi3g0955	671	FunFam	L-type lectin-domain containing receptor kinase IX.1	342	433	-	-
	Vvi3g0955	671	Gene3D	-	35	289	-	-
	Vvi3g0955	671	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Vvi3g0955	671	Gene3D	Transferase(Phosphotransferase) domain 1	434	647	-	-
	Vvi3g0955	671	ProSitePatterns	Protein kinases ATP-binding region signature.	363	386	IPR017441	GO:0005524
	Vvi3g0955	671	ProSiteProfiles	Protein kinase domain profile.	357	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0955	671	CDD	lectin_legume_LecRK_Arcelin_ConA	38	275	IPR001220	GO:0030246
	Vvi3g0955	671	Gene3D	Phosphorylase Kinase; domain 1	342	433	-	-
	Vvi3g0955	671	MobiDBLite	consensus disorder prediction	651	671	-	-
	Vvi3g0955	671	PANTHER	-	67	636	-	-
	Vvi3g0955	671	SUPERFAMILY	Protein kinase-like (PK-like)	341	663	IPR011009	-
	Vvi3g0955	671	FunFam	Lectin-domain containing receptor kinase A4.3	434	646	-	-
	Vvi3g0955	671	SMART	serkin_6	357	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0955	Vvi-Chr3	9859134	9861149	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g0955	37	645	Receptor kinase-like Gene Family	AT5G10530	49.355	0.0	550

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi3g0955		Pkinase	1.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0955	-		-	vvi:100265547	1174.07