Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0954 ATGATATCTGTCAAAACTGTGAAATGGTCCAGCAATATCACGGGAGGAAAGAAAAATCATGTTTCCATCAGTTATACTTCTAGTTCACATAATCTCAGTGTTGTCCTAATTACTGAGGTTACGAACAGTACCAATACTACGCAGAGCCTCTCTTACAAAGTTGATCTGAGGGAATACTTGCCTGAAAACGTTAGTATTGGCTTCTCAGCCGCAACAGGGGATTTATTCCAGATGAACAAAATTTGTTCATGGAAATTTAGTTCAACTTTGGAATTTCCCAGTTCTGTAGAACCAGGAGAGGGAAAGAAGACTGGACTTATGGTGGGATTGAGTGTTGGTGCATTTGTTGTGGTGGCTGGGTTGGGATTGGTTTGGTATTACATGTGGAAGAAGAGGAATACTGGGGGAGATCAAGAAGATGGTGCTGACTCTGACCTAGCCATGGATGAAGATTTTGAGAAGGGCACTGGACCGAGGAAGTTTTCGTTTTATGAATTGGCTCTTGCGACAAGTAACTTTGCAGAGGAGCAGAAGCTTGGAGAGGGAGGGTTTGGTGGGGTCTACAGAGGTTTCCTGAGGGAACTGAACTCTTATGTTGCAGTTAAGAGAGTATCAAGGAACTCCCAGCAGGGGATGAAGGAGTATGCATCTGAAGTGAAGATCTTCTGTCGATTGAGGCACCGGAACTTGGTGCAGCTCATGGGCTGGTGCCATAAGAAAGAAGAGCTCCTATTGGTTTACGAGTTGTTGCCAAATGGAAGCTTGAGCACCTGTCTTTTTGAAGAAAAAACCTTGTTAACATGGTCTATGAGGTATAGAATTGCTCTAGGCTTGGCCTCTTCGCTTCTGTACCTACATGAAGAATGGGAGCAGTGTGTGGTACATAGGGATATCAAGTCCAGTAATGTGATGTTGGACTCAGATTTTAATGCTAAGCTTGGAGATTTTGGGCTAGCCAGGCTTGTTGATCATGGTAAAGGGTCACAAACTACTGTTTTATCAGGGACCATGGGCTACATGGCTCCTGAATGTTTCGTGACAGGCAAGGCTAGTAAGGAATCTGACGTCTACAGTTTTGGAATTGTTGCATTGGAAATTTGCTGCGGAAGAAGAGCCGTGGAAGCAAAGGTCGAAGAAAATCAGATCAGATTGGTGGAGTGGGTTTGGGACCTCTATGGCGTAGGAAAACTTCTTGAAGCTGCTGATCCAAGACTGTCTGCAGATTATGATGAGCAACAAATGGAACGATTGATGATTGTTGGTCTTTGGTGTGCTCACCCGGATTGCAATGCTCGTCCTTCAATGAGGCAAGCAATTAGTGTCCTTAATTCTGAAGCTTTATTGCCTCTCCTTCCTATAAAAATGCCCGTGCCCATGTATTATGCTCCTCCAGCGCTGCAAACATCCTATAGCACTAGCGTTTCTGAAAGAAACCACACCCAGTTTTCCAACTCCTCTAATGGCACCACGGACTCATCAAAGTTCTCGGAATCTTCTCCAATCTTGTCTCAATTTGCATCCGTATTGCACACACGCTAA 1539 0.4438 MISVKTVKWSSNITGGKKNHVSISYTSSSHNLSVVLITEVTNSTNTTQSLSYKVDLREYLPENVSIGFSAATGDLFQMNKICSWKFSSTLEFPSSVEPGEGKKTGLMVGLSVGAFVVVAGLGLVWYYMWKKRNTGGDQEDGADSDLAMDEDFEKGTGPRKFSFYELALATSNFAEEQKLGEGGFGGVYRGFLRELNSYVAVKRVSRNSQQGMKEYASEVKIFCRLRHRNLVQLMGWCHKKEELLLVYELLPNGSLSTCLFEEKTLLTWSMRYRIALGLASSLLYLHEEWEQCVVHRDIKSSNVMLDSDFNAKLGDFGLARLVDHGKGSQTTVLSGTMGYMAPECFVTGKASKESDVYSFGIVALEICCGRRAVEAKVEENQIRLVEWVWDLYGVGKLLEAADPRLSADYDEQQMERLMIVGLWCAHPDCNARPSMRQAISVLNSEALLPLLPIKMPVPMYYAPPALQTSYSTSVSERNHTQFSNSSNGTTDSSKFSESSPILSQFASVLHTR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0954 512 MobiDBLite consensus disorder prediction 476 497 - -
Vvi3g0954 512 Gene3D Phosphorylase Kinase; domain 1 158 249 - -
Vvi3g0954 512 SUPERFAMILY Protein kinase-like (PK-like) 157 481 IPR011009 -
Vvi3g0954 512 Gene3D - 1 93 - -
Vvi3g0954 512 FunFam L-type lectin-domain containing receptor kinase IX.1 158 249 - -
Vvi3g0954 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Vvi3g0954 512 PANTHER - 11 456 - -
Vvi3g0954 512 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 196 IPR013320 -
Vvi3g0954 512 Gene3D Transferase(Phosphotransferase) domain 1 250 462 - -
Vvi3g0954 512 ProSitePatterns Protein kinases ATP-binding region signature. 179 202 IPR017441 GO:0005524
Vvi3g0954 512 FunFam Lectin-domain containing receptor kinase A4.3 250 462 - -
Vvi3g0954 512 Pfam Legume lectin domain 2 93 IPR001220 GO:0030246
Vvi3g0954 512 ProSiteProfiles Protein kinase domain profile. 173 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0954 512 SMART serkin_6 173 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0954 512 Pfam Protein kinase domain 174 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0954 Vvi-Chr3 9826460 9827998 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0954 1 461 Receptor kinase-like Gene Family AT5G10530 51.724 9.42e-167 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0954 Pkinase 7.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0954 - - vvi:100245063 927.932