Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0953 ATGGGCTACATGGCTCCTGAATGTTTCATGACAGGCAAGGCTAGTAAGGAATCTGACTTGTACAGTTTTGGAATTGTTGCATTGGAAATTTGCTGTGGAAGAAGAGTCGTGGAAACAAAGGCCGAAGAAAATCAGATCAGATTGGTGGAGTGGGTTTGGGACCTCTATGGCGTAGGAAAACTTCTTGAAGCAGCTGATCCAAGACTGTTTGTAGATTATGATGATCAACAAATGGAGCAATTGATGATTGTTGGTCTTTGGTGTGCTCACCCTGATTGCAATGCTCGTCCTTCAATGAGGGAAGCAATGAGTGTCCTTAATTCTGAAGCTTTATTGCCTCTTCTTCTTATAAAAATGCCTATGCCAATGTATTACGCTCCCCCAGCGCTGCAGACATCCTATAGCACTAGCCTTTTTGAGAGAAACCACACCCAGTTTTCCAACTCCTCTAATGGCACCACGGACTCATCAAAGGTCTCTAAATCTTCTTCAACCTTGTCTCAATCCGCATCCCTATTGCACACACGCTAA 531 0.4388 MGYMAPECFMTGKASKESDLYSFGIVALEICCGRRVVETKAEENQIRLVEWVWDLYGVGKLLEAADPRLFVDYDDQQMEQLMIVGLWCAHPDCNARPSMREAMSVLNSEALLPLLLIKMPMPMYYAPPALQTSYSTSLFERNHTQFSNSSNGTTDSSKVSKSSSTLSQSASLLHTR* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0953 176 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0953 176 FunFam Lectin-domain containing receptor kinase A4.3 1 126 - -
Vvi3g0953 176 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Vvi3g0953 176 SUPERFAMILY Protein kinase-like (PK-like) 2 144 IPR011009 -
Vvi3g0953 176 Pfam Protein tyrosine and serine/threonine kinase 3 102 IPR001245 GO:0004672|GO:0006468
Vvi3g0953 176 MobiDBLite consensus disorder prediction 145 176 - -
Vvi3g0953 176 PANTHER - 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0953 Vvi-Chr3 9776628 9777158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0953 1 125 Receptor kinase-like Gene Family AT5G10530 53.906 2.08e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0953 PK_Tyr_Ser-Thr 1.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0953 - - vvi:100241713 322.783