Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0952 ATGGGTGCTTGCAACACTCGTATGGAATCTCACAAACTTCTCTCCTTTCATCTCTTCATGATTTCCATTTTCTTCTTCCTAATATTCTTCCCTTCTGCAACTTCGTTGTCCTTCAACTTCTCTAGCTTTGGTTCAAATGACCATAATATATCCTTCGACGAAGCAGGAGACGCTGTATATTCTTCGGACGGATGCATCCAACTGACCAGAAACGAGAACGACAAGCAATCGAATGATAGTTGGGGTCGAGCCATGTATAGCGAGCGATTGTATCTCTGGGATCAGACCTCCAGAAATCTAACTGATTTCACTACCAATTTCTCCTTTGTCATCAATTCACAAGACCACAATCAGTATGCCGATGGACTTACGTTCTTCCTTAATGGTACCCAATTGCATACAGATACGTTGGGAGAAACTCTTGGTCTCGCCAACGAAAAGAATGAGACAAACAAAAGTGCCGTTACTTTTATTGCAGTGGAGTTTGATACATTTACAAACGCAGCAAAGAGGGATCCGGAAGGTGAGCATATTGGTATTGATATTAACTCCATGATATCTGTTAAAACTGTGAACTGGTCCAGCAATATCACGGGAGGAAAGCTAAATCATGTTTCCATCAGTTATACTTCTAGTTCACATAATCTGAGTGTTGTCCTAATTACCGAGGTTACGGACAGTACCAATACTACACAAAGCCTCTCTTACAAAGTTGATCTGAGGGAATACTTGCCGGAATACGTTACTATGGGTTTCTCAGGCTCAACAGGAAGCTATTTCCAGATAAACAAAATTTGCTCATGGAATTTTAGTTCAACTTTGGAACCTCCCAGTTCTGTAGAACCCGGAGAGGGAAAGAAGACAGAACTTGTGGTGGGATTGAGTGTTTGTGCATTTGTTGTGGTGGGTGGGTTTGGATTGGCTTGGTTTTACTTGTGGAGGAAGAGGAATACTGAGAGAGATCAAGAAGACGGTGGTGACAGTGACCTGGACATGGACGAAGATTTTGAGAAGGGTACTGGACCGAGGAAGTTTTCCTTTAATGAATTGGCTCTTGCGACCAGTAACTTTTCAGAGGGAGAGAAGCTTGGAGAGGGAGGGTTTGGTGGGGTCTATAGAGGTTTCTTGCGAGAACTGAACTCTTATGTTGCAGTTAAGAGGGTAACAAGGAACTCCCAACAGGGGATGAAGGAGTACGCATCTGAAGTGAAGATCTTTTGTCGATTGAGGCACCGGAACTTGGTGCAGCTCATGGGCTGGGCTCTCCTCTTCAGATGCATGATTGTGAGGCTCTATTGGCATTTTAGCAACTTCCCTTGGCTTTGCAAAGTGTTTTTGCAAACCTTCCTCCATTTCGCAAGTCAATTTTGCAATTTGATGGCCATTTCTAAGCTTGGAGGTGATTTCGCAGCCATTTCAAAGTTTGGAGATCATTTCACAGGCAATGGGCAATTTCGCAGCCCATTTCTGAAGCTTGGAGCATTTTCGCAGCAGGAGGTGGATTTCGTAGAGGAGGGGAATTCTCGCAGCCCATTTCGTAACTTAAAAGTGATTTCGCAGGTGTATCGCAGCTTCAAAAATGAGGAGAACTGTGCTGCAAAATGGCACTCGTGTGCCAAAAGTGGTTTCGCAGCTGCGAAATACCCTTCCAAATGGTGTCTCGGTTGCGAAATTCTCGCTCAGCTTTGCGTGCTTGTCTTCAAATAA 1707 0.44 MGACNTRMESHKLLSFHLFMISIFFFLIFFPSATSLSFNFSSFGSNDHNISFDEAGDAVYSSDGCIQLTRNENDKQSNDSWGRAMYSERLYLWDQTSRNLTDFTTNFSFVINSQDHNQYADGLTFFLNGTQLHTDTLGETLGLANEKNETNKSAVTFIAVEFDTFTNAAKRDPEGEHIGIDINSMISVKTVNWSSNITGGKLNHVSISYTSSSHNLSVVLITEVTDSTNTTQSLSYKVDLREYLPEYVTMGFSGSTGSYFQINKICSWNFSSTLEPPSSVEPGEGKKTELVVGLSVCAFVVVGGFGLAWFYLWRKRNTERDQEDGGDSDLDMDEDFEKGTGPRKFSFNELALATSNFSEGEKLGEGGFGGVYRGFLRELNSYVAVKRVTRNSQQGMKEYASEVKIFCRLRHRNLVQLMGWALLFRCMIVRLYWHFSNFPWLCKVFLQTFLHFASQFCNLMAISKLGGDFAAISKFGDHFTGNGQFRSPFLKLGAFSQQEVDFVEEGNSRSPFRNLKVISQVYRSFKNEENCAAKWHSCAKSGFAAAKYPSKWCLGCEILAQLCVLVFK* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0952 568 Pfam Protein kinase domain 358 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0952 568 PANTHER - 61 421 - -
Vvi3g0952 568 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Vvi3g0952 568 SMART tyrkin_6 357 559 IPR020635 GO:0004713|GO:0006468
Vvi3g0952 568 Gene3D - 33 277 - -
Vvi3g0952 568 CDD lectin_legume_LecRK_Arcelin_ConA 36 274 IPR001220 GO:0030246
Vvi3g0952 568 Gene3D Phosphorylase Kinase; domain 1 342 429 - -
Vvi3g0952 568 ProSitePatterns Legume lectins beta-chain signature. 158 164 IPR019825 -
Vvi3g0952 568 ProSiteProfiles Protein kinase domain profile. 357 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0952 568 Pfam Legume lectin domain 35 279 IPR001220 GO:0030246
Vvi3g0952 568 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 274 IPR013320 -
Vvi3g0952 568 SUPERFAMILY Protein kinase-like (PK-like) 342 427 IPR011009 -
Vvi3g0952 568 FunFam L-type lectin-domain containing receptor kinase IX.1 34 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0952 Vvi-Chr3 9762424 9767619 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0952 21 420 Receptor kinase-like Gene Family AT5G10530 37.438 1.61e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0952 Lectin_legB 3.4e-69 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0952 - - vvi:104878863 799.66