Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0951 ATGAGGTATAGAATTGCTCTAGGCTTGGCCTCTTCGCTTCTGTACCTACATGAAGAATGGGAGCAGTGTGTGGTACACAGGGACATCAAGTCCAGTAATGTGATGCTAGACTCAGATTTTAATGCTAAGCTTGGAGATTTTGGGCTAGCCAGGCTTGTTGATCATGGTAAAGGGTCACAAACCACTGTTTTAGCAGGGACCATGGGCTACATAGCTCCTGAATGTTTCATGACAGGCAAGGCTAGTAAGGAATCTGACGTGTACAGTTTTGGAATTGTTGCATTGGAAATTTGCTGTGGAAGAAGAGCCGTGGAAACAAAGGCCGAAGAAAATCAGATCAGATTGGTGGAGTGGGTTTGGGACCTCTATGGCGTAGGAAAACTTCTTGAAGCAGCTGATCCAAGACTGTCTGCAGATTATGATGATCAACAAATGGAACGATTGATGATTGTTGGTCTTTGGTGTGCTCACCCGGATTGCAATGCTCGTCCTTCAATGAGGGAAGTAATGAGTGTCCTTAATTCTGAAGCTTTATTGCCTCTTCTTCCTATAAAAATGCCTGTGCCAATGTATTACGCTCCTCCGGCGTTGCAGACATCCTATAGCACTAGCCTTTCTGAGAGAAACCACACCCAGTTTTCCAACTCCTCTAATGGCACCACGGACTCATCAAAGGTCTCAGAATCTTCTTCAACCTTGTCTCAATCCACATCCCTATTGCACACACGCTAA 732 0.4508 MRYRIALGLASSLLYLHEEWEQCVVHRDIKSSNVMLDSDFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYIAPECFMTGKASKESDVYSFGIVALEICCGRRAVETKAEENQIRLVEWVWDLYGVGKLLEAADPRLSADYDDQQMERLMIVGLWCAHPDCNARPSMREVMSVLNSEALLPLLPIKMPVPMYYAPPALQTSYSTSLSERNHTQFSNSSNGTTDSSKVSESSSTLSQSTSLLHTR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0951 243 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0951 243 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0951 243 PANTHER - 2 202 - -
Vvi3g0951 243 MobiDBLite consensus disorder prediction 203 243 - -
Vvi3g0951 243 Gene3D Transferase(Phosphotransferase) domain 1 1 194 - -
Vvi3g0951 243 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Vvi3g0951 243 FunFam Lectin-domain containing receptor kinase A4.3 1 193 - -
Vvi3g0951 243 SUPERFAMILY Protein kinase-like (PK-like) 2 212 IPR011009 -
Vvi3g0951 243 Pfam Protein kinase domain 5 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0951 Vvi-Chr3 9757026 9757757 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0951 1 192 Receptor kinase-like Gene Family AT5G10530 64.103 3.76e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0951 Pkinase 1.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0951 - - vvi:104878862 447.203