LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0948	ATGTATAGCGAGCGATTGTATCTCTGGGATCAGACCTCCAGAAATCTAACTGATTTCACTAGCAATTTCTCCTTTGTCATCAATTCACAAGGCTCCAGTCAGCATGCCGATGGACTTACGTTCTTCCTTAATGGTACCCAATTGCATACAGATACGTTGGGAGGAACTCTTGGTCTCGCCAACGAAAAGAATGAGACAAACAAAAGTGCAGTTACTTTTATTGCAGTGGAGTTTGATACATTTACAAACGCAGCAAAGAAGGATCCGGAAGGTGAGCACATTGGTATTGATATTAACTCCATGATATCTGTTAAAACTGTGAACTGGTCCAGCAATATCACGGGAGGAAAGAAAAATCATGTTTCCATCAGTTATACTTCTAGTTCACATAATCTGAGTGTTGTCCTAATTACTGAGGTTACGGACAGTACCAATACTACGCAAAGCCTCTCTTACGAAATTGATCTGAGGGAATACTTGCCGGAATACGTTACTATGGGCTTCTCAGGCGCAACAGGAACCTATTTCCAGATAAACAAAATTTGCTCATGGAATTTTAGTTCAACTTTGGAATTTCCCAGTTCTGTAGAACCAGGAGAGGGAAAGAAGACAGGACTTATGGTGGGATTGAGTGTTGGTGCATTTGTTGTGGTGGGTGGGTTGGGATTGGTTTGGTATTACATGTGGAAGAAGAGGAATACTGGGGGAGATCAAGAAGATGGTGCTGACTCTGACCTAGCAATGGATGAAGATTTTGAGAAGGGTACTGGACCGAGGAAGTTTTCTTTTAATGAATTGGCTCTTGCGACCAGTAACTTTTCAGACGGAGAGAAGCTTGGAGAGGGAGGGTTTGGTGGGGTCTATAGAGGTTTCTTGGGGGAACTGAACTCTTATGTTGCAGTTAAGAGAGTAACAAGGAACTCCCAACAGGGGATGAAGGAGTACGCATCTGAAGTGAAGATCTTCTGTCGATTGAGGCACCGGAACTTGGTGCGGCTCATGGGCTGGTGCCATCAAAAAGGAGAGCTCCTATTGGTTTACGAGTTGTTGCCAAATGGAAGCTTGAGCACCTGTCTTTTTGAAGAAAAAACCTTGTTAACATGGGCTATGAGGTATAGAATTGCTCTAGGCTTGGCCTCTTCGCTTCTGTACCTACATGAAGAATGGGAGCAGTGTGTGGTACACAGGGACATCAAGTCCAGTAATGTGATGCTGGACTCAGATTTTAATGCTAAGCTTGGATATTTTGGGTTAGCCAGGCTTGTTGATCATGGTAAAGGGTCACAAACCACTGTTTTAGCAGGGACCATGGGCTACATAGCTCCTGAATGTTTCATGACAGGCAAGGCTAGTAAGGAATCTGACGTGTACAGTTTTGGAATTGTTGTATTGGAAATTTGCTGTGGAAGAAGAGCCGTGGAAACAAAGGCCGAAGAAAATCAGATCAGATTGGTGGAGTGGGTTTGGGACCTCTATGGCGTAGGAAAACTTCTTGAAGCTGCTGATCCAAGACTGTCTGCAGATTATGATGATCAACAAATGGAACGATTGATGATTGTTGGTCTTTGGTGTGCTCACCCGGATTGCAATGCTCGTCCTTCAATGAGGCAAGCAATTAGTGTCCTTAATTCTGAAGCTTTATTGCCTCTTCTTCCTATAAAAATGCCTGTGGCAATGTATTACGCTCCTCCGGCGCTGCAGACATCCTATAGCACTAGCCTTTCTGAGAGAAACCACACCCAGTTTTCCAACTCCTCTAATGGCACCGCGGACTCATCAAAGGTCTCAGAATCTTCTTCAACCTTGTCTCAATCCGCATCCCTATTGCACAGACGCTAA	1839	0.4415	MYSERLYLWDQTSRNLTDFTSNFSFVINSQGSSQHADGLTFFLNGTQLHTDTLGGTLGLANEKNETNKSAVTFIAVEFDTFTNAAKKDPEGEHIGIDINSMISVKTVNWSSNITGGKKNHVSISYTSSSHNLSVVLITEVTDSTNTTQSLSYEIDLREYLPEYVTMGFSGATGTYFQINKICSWNFSSTLEFPSSVEPGEGKKTGLMVGLSVGAFVVVGGLGLVWYYMWKKRNTGGDQEDGADSDLAMDEDFEKGTGPRKFSFNELALATSNFSDGEKLGEGGFGGVYRGFLGELNSYVAVKRVTRNSQQGMKEYASEVKIFCRLRHRNLVRLMGWCHQKGELLLVYELLPNGSLSTCLFEEKTLLTWAMRYRIALGLASSLLYLHEEWEQCVVHRDIKSSNVMLDSDFNAKLGYFGLARLVDHGKGSQTTVLAGTMGYIAPECFMTGKASKESDVYSFGIVVLEICCGRRAVETKAEENQIRLVEWVWDLYGVGKLLEAADPRLSADYDDQQMERLMIVGLWCAHPDCNARPSMRQAISVLNSEALLPLLPIKMPVAMYYAPPALQTSYSTSLSERNHTQFSNSSNGTADSSKVSESSSTLSQSASLLHRR*	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0948	612	PANTHER	-	2	556	-	-
	Vvi3g0948	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	393	405	IPR008271	GO:0004672\|GO:0006468
	Vvi3g0948	612	Pfam	Protein kinase domain	274	539	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0948	612	CDD	lectin_legume_LecRK_Arcelin_ConA	1	190	IPR001220	GO:0030246
	Vvi3g0948	612	FunFam	Lectin-domain containing receptor kinase A4.3	350	562	-	-
	Vvi3g0948	612	Gene3D	Phosphorylase Kinase; domain 1	258	349	-	-
	Vvi3g0948	612	FunFam	L-type lectin-domain containing receptor kinase IX.1	258	349	-	-
	Vvi3g0948	612	MobiDBLite	consensus disorder prediction	577	612	-	-
	Vvi3g0948	612	ProSitePatterns	Protein kinases ATP-binding region signature.	279	302	IPR017441	GO:0005524
	Vvi3g0948	612	ProSiteProfiles	Protein kinase domain profile.	273	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0948	612	ProSitePatterns	Legume lectins beta-chain signature.	74	80	IPR019825	-
	Vvi3g0948	612	CDD	STKc_IRAK	279	543	-	-
	Vvi3g0948	612	Gene3D	Transferase(Phosphotransferase) domain 1	350	563	-	-
	Vvi3g0948	612	SUPERFAMILY	Protein kinase-like (PK-like)	257	580	IPR011009	-
	Vvi3g0948	612	SMART	serkin_6	273	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0948	612	SUPERFAMILY	Concanavalin A-like lectins/glucanases	2	190	IPR013320	-
	Vvi3g0948	612	Gene3D	-	1	193	-	-
	Vvi3g0948	612	Pfam	Legume lectin domain	1	193	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0948	Vvi-Chr3	9739486	9741324	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g0948	2	561	Receptor kinase-like Gene Family	AT5G10530	48.858	0.0	528

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi3g0948		Pkinase	8.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0948	-		-	vvi:100245063	1166.76