Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0940 ATGGAGGATCCGACTTTTATTCATCCATGGCAGACGAACTTTCTTGAGGAGCTCACTGTACTGCCAATGGAAGCTGCATTTGGAGAGCATCTGTATCAGGCTTTCAGTCATCACCAGTCCTTCAACCTCAAGCCTTCAATGGAGATCAATTCCCATGTTGGTTTGGATAGGCCTCTGAAACTACTCAAACCCAATAGCTGGAACCCCTCCAATACTAATGATATGGATATGCCACACCCACTTGTTCCTTCTTCTCCCAATGTTTTCTCCTTTGTCAATTCCAACTACACGAATCAAGTACCTGTTGTGAAGCCTAAGGAGGAGGCAGTGTCTTCCAAAAGCAGTGCCACTTTCCCTTCTGATGGTTTGGTCTCTCAAGGCTTGTTTGAGAACCAAAACTATGTGTTTAAAGCCAGCCAAGGAGCTAAAAGAATCAGCACCACCACTGCTAGGCATTCTCAGACTCAAGATCATATAATAGCAGAAAGGAAGCGTCGAGAGAAGCTCAGTCAGCGCTTCATAGCTTTATCAGCCATTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCTGTTCTTGGGGATGCTATCAAGTACTTGAAACAACTGCAGGAGCGAGTTAAGACACTGGAGGAGCAAACAAGGAAGAAAACAACGGAATCCGTGGTCTTCGTGAAGAAATCCCAAGTCTTTCTTGATGGAGATAACTCTTCCTCTGACGAGGATTTCTCCGGCAGCCCCTTAGACGAGCCACTACCAGAAATTGAAGCGAGGTTCTCAGACAAAAGTGTCCTTATCCGAATCCACTGTGAGAAAAGGAAAGGAGTTGTGGAGAAACTAGTAGCTGAAGTTGAGGGCCTCCATCTCACAGTCATCAATAGCAGTGTCATGACATTTGGGAACTCAGCTCTGGATGTCACCATTATCGCTGAGATGGAAGTGGAATTCAGCATGACAGTGAAGGACCTTGTGAAGAAACTACATGCAGGGCTCAAATAG 996 0.4558 MEDPTFIHPWQTNFLEELTVLPMEAAFGEHLYQAFSHHQSFNLKPSMEINSHVGLDRPLKLLKPNSWNPSNTNDMDMPHPLVPSSPNVFSFVNSNYTNQVPVVKPKEEAVSSKSSATFPSDGLVSQGLFENQNYVFKASQGAKRISTTTARHSQTQDHIIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQERVKTLEEQTRKKTTESVVFVKKSQVFLDGDNSSSDEDFSGSPLDEPLPEIEARFSDKSVLIRIHCEKRKGVVEKLVAEVEGLHLTVINSSVMTFGNSALDVTIIAEMEVEFSMTVKDLVKKLHAGLK* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0940 331 PANTHER BHLH TRANSCRIPTION FACTOR 29 330 - -
Vvi3g0940 331 Gene3D - 146 218 IPR036638 GO:0046983
Vvi3g0940 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Vvi3g0940 331 FunFam Basic helix-loop-helix family protein 150 219 - -
Vvi3g0940 331 SMART finulus 159 208 IPR011598 GO:0046983
Vvi3g0940 331 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Vvi3g0940 331 Coils Coil 192 219 - -
Vvi3g0940 331 CDD bHLH_AtNAI1_like 153 227 - -
Vvi3g0940 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 216 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0940 Vvi-Chr3 9525233 9526529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0940 140 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 59.278 2.26e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi3g0940 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0940 - - vvi:100248064 650.203