Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0935 ATGTCGGCACGCCACCTTTACCGGCCACCGCCTCTGCTCGTTCTTCTCCTTTTCATCTTCTCCGTGATTCTTCCTTCTCAATCCGACGAGCTCCAAATACTGCTCAAGTTCAAATCAGCACTCGAAAAATCCAACACGAGTGTTTTCGATACATGGACACAGGGCAATTCCGTTCGCAATTTCACTGGAATCGTCTGCAATTCCAATGGGTTTGTTACAGAGATATTGCTTCCTGAGCAACAACTGGAGGGGGTTCTTCCTTTTGATTCCATATGTGAGTTGAAATCGCTTGAAAAGATCGATCTGGGAGCAAATGTTTTGCATGGAGGCATCGGCGAAGGCTTGAAGAATTGCAGTCAGTTGCAGTACTTGGACTTGGGGGTCAATTTTTTTACGGGAACGGTGCCGGAGTTGTCATCTTTGAGTGGCCTGAAATTCTTAAATTTAAACTGTAGCGGATTTTCGGGGAGTTTTCCATGGAAATCACTGGAGAATCTCACCAATCTTGAGTTTTTGAGCCTCGGAGACAATCAATTTGAGAGAAGTTCATTTCCTCTGGAGATTCTGAAGCTCGATAAATTGTATTGGCTTTATCTTACAAACAGCAGCTTAGAAGGACAAGTTCCAGAAGGAATTGGAAATTTGACACAGCTTCAAAATCTCGAACTCTCGGATAATTACCTGCATGGGGAAATTCCGGTGGGAATCGGAAAACTTTCCAAGCTTTGGCAGCTCGAGCTATATGACAACAGGTTTTCTGGAAAGTTCCCGGAAGGATTCGGAAACCTTACGAACCTTGTGAATTTCGATGCTTCGAATAATAGTCTGGAAGGTGATCTCTCGGAGCTGAGATTCTTGACTAAGCTCGCTTCCCTTCAACTATTCGAAAATCAATTCTCAGGAGAGGTTCCTCAGGAGTTTGGGGAGTTCAAATACCTTGAAGAATTCTCGCTGTACACCAACAATCTCACCGGTCCGCTTCCGCAAAAGCTTGGTTCATGGGGGGACCTCACCTTCATTGATGTTTCAGAGAATTTTCTCACCGGCGCTATACCGCCAGAGATGTGCAAGCAGGGGAAGTTGGGTGCACTCACCGTGCTCAAAAATAAATTCACCGGTGAAATACCAGCAAACTATGCAAACTGTTTGCCGTTGAAGCGGTTACGAGTTAACAACAATTTTCTTTCGGGCATAGTGCCTGCCGGAATATGGAGTTTGCCCAATCTCAGTCTAATTGATTTTAGGGTGAATCATTTCCATGGCCCGGTGACCTCCGACATTGGGAATGCCAAGTCTCTAGCACAATTGTTCTTGGCTGACAATGAATTTTCTGGTGAATTGCCCGAGGAAATCTCGAAAGCTTCATTGTTAGTGGTTATTGATCTGAGTTCGAACAAGTTTTCGGGTAAAATTCCAGCGACAATCGGAGAATTGAAAGCATTAAACAGTCTTAATCTGCAAGAAAACAAGTTCTCCGGCCCCATTCCAGAGTCCCTAGGCTCGTGTGTTTCCTTAGACGATGTCAACCTCTCCGGTAATTCTCTTTCCGGTGAAATCCCTGAGAGTCTTGGAACTTTATCCACTCTAAACTCCTTAAACCTATCCAACAACCAACTTTCCGGCGAAATTCCCTCGAGTCTGTCATCGCTTAGATTGAGTCTTCTTGATCTAACAAACAATAAGTTGAGCGGCCGCGTACCGGAATCTTTGTCAGCGTATAACGGGAGCTTCTCCGGAAATCCTGATCTGTGCAGTGAGACCATCACGCATTTCCGATCATGCTCGTCGAATCCGGGCTTGTCCGGTGATCTCAGGAGAGTCATCTCCTGCTTCGTCGCCGTAGCAGCCGTCATGCTCATCTGCACCGCATGCTTCATCATCGTCAAAATAAGATCCAAAGATCACGACCGTCTGATCAAATCAGATTCTTGGGATCTGAAATCATACCGTTCGCTGTCCTTCTCCGAATCAGAAATCATCAACTCAATCAAACAAGACAACCTCATCGGCAAAGGCGCATCGGGAAACGTGTACAAGGTTGTCCTCGGGAACGGCACCGAGCTCGCCGTGAAACACATGTGGAAATCAGCCTCCGGCGACAGGAGAGCATGCCGGAGCACGACGGCGATGTTGGGGAAACGTAATAGACGGCCTTCGGAGTACGAGGCGGAGGTGGCGACGCTGAGCTCGGTGAGGCACATGAACGTGGTGAAACTGTACTGTAGCATAACGAGCGAGGACTCGGATCTGCTGGTTTACGAGTACCTGAGGAACGGGAGCTTGTGGGACCGGTTGCACACGTGTCAGAAAATGGAGATGGATTGGGATGTGCGATACGACATCGCGGTGGGGGCCGGTAGAGGATTAGAGTATCTGCACCATGGATGTGATCGGACGGTCATACATCGCGATGTCAAGTCCAGTAATATCCTATTGGACGTTGATCTGAAGCCTAGGATTGCTGACTTTGGGCTGGCGAAGATGCTGCACGGAGCTGCAGGTGGGGACACGACGCATGTGATTGCTGGCACCCATGGGTACATAGCTCCCGAGTACGCATACACATGCAAGGTAACGGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTGTTGATGGAGTTGGTGACAGGTAAAAGACCAATCGAACCAGAATTCGGGGAGAATAAGGACATAGTGTATTGGGTATACAACAACATGAAGAGTAGAGAGGATGCAGTTGGTTTGGTGGACTCCGCCATCTCAGAGGCCTTCAAGGAAGATGCCGTCAAGGTGTTGCAAATTTCAATTCATTGCACCGCAAAGATTCCGGTATTGAGGCCTTCCATGAGAATGGTGGTTCAAATGTTGGAAGACTTCAAGCCTTGTAAGCTTACAAACATTGTAGTTAGCAAGGGTGGTGAAGGTAGTGCTCCATCCCTTGAATTCTAA 2928 0.4747 MSARHLYRPPPLLVLLLFIFSVILPSQSDELQILLKFKSALEKSNTSVFDTWTQGNSVRNFTGIVCNSNGFVTEILLPEQQLEGVLPFDSICELKSLEKIDLGANVLHGGIGEGLKNCSQLQYLDLGVNFFTGTVPELSSLSGLKFLNLNCSGFSGSFPWKSLENLTNLEFLSLGDNQFERSSFPLEILKLDKLYWLYLTNSSLEGQVPEGIGNLTQLQNLELSDNYLHGEIPVGIGKLSKLWQLELYDNRFSGKFPEGFGNLTNLVNFDASNNSLEGDLSELRFLTKLASLQLFENQFSGEVPQEFGEFKYLEEFSLYTNNLTGPLPQKLGSWGDLTFIDVSENFLTGAIPPEMCKQGKLGALTVLKNKFTGEIPANYANCLPLKRLRVNNNFLSGIVPAGIWSLPNLSLIDFRVNHFHGPVTSDIGNAKSLAQLFLADNEFSGELPEEISKASLLVVIDLSSNKFSGKIPATIGELKALNSLNLQENKFSGPIPESLGSCVSLDDVNLSGNSLSGEIPESLGTLSTLNSLNLSNNQLSGEIPSSLSSLRLSLLDLTNNKLSGRVPESLSAYNGSFSGNPDLCSETITHFRSCSSNPGLSGDLRRVISCFVAVAAVMLICTACFIIVKIRSKDHDRLIKSDSWDLKSYRSLSFSESEIINSIKQDNLIGKGASGNVYKVVLGNGTELAVKHMWKSASGDRRACRSTTAMLGKRNRRPSEYEAEVATLSSVRHMNVVKLYCSITSEDSDLLVYEYLRNGSLWDRLHTCQKMEMDWDVRYDIAVGAGRGLEYLHHGCDRTVIHRDVKSSNILLDVDLKPRIADFGLAKMLHGAAGGDTTHVIAGTHGYIAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPIEPEFGENKDIVYWVYNNMKSREDAVGLVDSAISEAFKEDAVKVLQISIHCTAKIPVLRPSMRMVVQMLEDFKPCKLTNIVVSKGGEGSAPSLEF* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0935 975 FunFam Receptor-like protein kinase HAIKU2 646 755 - -
Vvi3g0935 975 SMART LRR_typ_2 478 502 IPR003591 -
Vvi3g0935 975 SMART LRR_typ_2 215 239 IPR003591 -
Vvi3g0935 975 SMART LRR_typ_2 526 550 IPR003591 -
Vvi3g0935 975 SMART LRR_typ_2 166 191 IPR003591 -
Vvi3g0935 975 FunFam Leucine-rich receptor-like protein kinase family protein 283 379 - -
Vvi3g0935 975 ProSiteProfiles Protein kinase domain profile. 663 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0935 975 FunFam Inactive leucine-rich repeat receptor-like protein kinase 380 472 - -
Vvi3g0935 975 FunFam Leucine-rich receptor-like protein kinase family protein 187 282 - -
Vvi3g0935 975 SUPERFAMILY L domain-like 304 591 - -
Vvi3g0935 975 Gene3D Transferase(Phosphotransferase) domain 1 756 962 - -
Vvi3g0935 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Vvi3g0935 975 SUPERFAMILY L domain-like 55 394 - -
Vvi3g0935 975 ProSiteProfiles Leucine-rich repeat profile. 528 551 IPR001611 GO:0005515
Vvi3g0935 975 Pfam Leucine Rich Repeat 529 550 IPR001611 GO:0005515
Vvi3g0935 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 24 949 - -
Vvi3g0935 975 Pfam Protein kinase domain 665 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0935 975 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 756 964 - -
Vvi3g0935 975 Gene3D Ribonuclease Inhibitor 283 380 IPR032675 -
Vvi3g0935 975 Gene3D Ribonuclease Inhibitor 381 471 IPR032675 -
Vvi3g0935 975 Gene3D Ribonuclease Inhibitor 472 594 IPR032675 -
Vvi3g0935 975 Gene3D Phosphorylase Kinase; domain 1 646 755 - -
Vvi3g0935 975 SMART serkin_6 663 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0935 975 ProSitePatterns Protein kinases ATP-binding region signature. 669 691 IPR017441 GO:0005524
Vvi3g0935 975 FunFam Receptor protein-tyrosine kinase CEPR2 473 594 - -
Vvi3g0935 975 SUPERFAMILY Protein kinase-like (PK-like) 652 950 IPR011009 -
Vvi3g0935 975 Gene3D Ribonuclease Inhibitor 29 182 IPR032675 -
Vvi3g0935 975 Gene3D Ribonuclease Inhibitor 183 282 IPR032675 -
Vvi3g0935 975 FunFam Probable inactive receptor kinase RLK902 27 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0935 Vvi-Chr3 9438942 9441961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0935 17 964 Receptor kinase-like Gene Family AT1G09970 59.182 0.0 1107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi3g0935 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0935 - - vvi:100248069 1890.16