Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0928 ATGTTTTCAGCTCCAGAGAATTCAAGTCATTTTGATGCGCCTCATTTACCTCAGCATTATGATGGCTCTGCTATGTTCTATGGGATTCGCCTTCATCATCCACTCCCCAGTCTTGATATAGCTGTTGCTCCTCGATCCAACATTTATGATCCTTACTCGACCCCTTCATCTGGATACAGAGGGTTCCCTGTTTCTATGAATCATGGACCATCTGGTCAGTTGCCATCTTCCAGCAATCACGGAGTCATTGGAGTTTCTACATATGAACGAAAGAATGCTCAAGGCATCCTGGGGAATTTTCAGTATTTTAATGGCTTTGCAAGCTCTAGTTCTTCGGCTCCCCCTTTCAATACATGGCATCTTGAATCCGGGATTCCCGTGATGGATTCTGCATCTTTGGCCTTTGCCCAGCCGCAGTACAGAGGGAATAATGCTCCTTCAATCATGGAAGTAGGATCTCACAGAAGTGTGAGGAACAGATCAGGGGGTGTTGGGCAGGATTCTGTTCTGGCACATAATCATTACCATTTGGTGCAAGGAAACTATATTGGCCATCCTTTTCAGCCTTCTGGCAATCCCTGGGTTGACCAACAATCAGGCAATAATGGTAGTGGTGGGGGAACTTTGGCCTGGAATCATGGACCTGCTTTACCTTATTTGCATGGGAGCAATATCAGTGGAGGTTCTAGAGAGGCTCGGAATGTGGGTATACAGGGATACCATGATACATCTAGTGCCAGAAGTTCCACAGATTACCTTCAACCTCCTGTCCTTCACCGGCACCATAATCTTCATTATCCACCACCACAACCTATGCAAGGAGCAAGAAGACATTTCCTCCCTCAAGTGGTGGCATCTTCGTATAGACTTGCCACGATTAGTTCACGTAGTCCTGTGCCTCCTCAGGTTGGTGTCGAGGCAGGGCACAGGCATCCAGGACCTGTTCCACCTACTTGGATCAGGATAGATCGATCTCATCGAGGGGGAGTCGCACCTGAGGCAACATCGAGACATGGTAATCTGCCTTACTTGAGAACGCTCCCAGAAGAAGAAGTTGCCATACTAGATCTTTCAGCATCTTATCAAGTAGGGGAAGTAAGCACAGGGCTTTCAGAGGAATCCATTACAAATTGTCTAAAAACTAGAACTTATATATCTTCAACTTGTCTGAATCTGGAAGAGGGTGCAAGTATGGATCAGGAAAAGGATTCTTGCATTATATGCCAGGAGGAGTATGAGAATGAAGAGAAGATTGGATTTCTTGATTGTGGGCATGAGTACCATGCAGATTGCTTGAAGAAGTGGGTGCTGGTGAAGAATGTGTGCCCCCTCTGCAGAGCCCCAGCAATGACCCCAAAAAAGAAGGATGTATAG 1374 0.4636 MFSAPENSSHFDAPHLPQHYDGSAMFYGIRLHHPLPSLDIAVAPRSNIYDPYSTPSSGYRGFPVSMNHGPSGQLPSSSNHGVIGVSTYERKNAQGILGNFQYFNGFASSSSSAPPFNTWHLESGIPVMDSASLAFAQPQYRGNNAPSIMEVGSHRSVRNRSGGVGQDSVLAHNHYHLVQGNYIGHPFQPSGNPWVDQQSGNNGSGGGTLAWNHGPALPYLHGSNISGGSREARNVGIQGYHDTSSARSSTDYLQPPVLHRHHNLHYPPPQPMQGARRHFLPQVVASSYRLATISSRSPVPPQVGVEAGHRHPGPVPPTWIRIDRSHRGGVAPEATSRHGNLPYLRTLPEEEVAILDLSASYQVGEVSTGLSEESITNCLKTRTYISSTCLNLEEGASMDQEKDSCIICQEEYENEEKIGFLDCGHEYHADCLKKWVLVKNVCPLCRAPAMTPKKKDV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0928 457 ProSiteProfiles Zinc finger RING-type profile. 405 446 IPR001841 -
Vvi3g0928 457 FunFam Uncharacterized protein 391 456 - -
Vvi3g0928 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 86 450 IPR045191 GO:0061630
Vvi3g0928 457 SMART ring_2 405 445 IPR001841 -
Vvi3g0928 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 456 IPR013083 -
Vvi3g0928 457 CDD RING-H2_RNF24-like 403 449 - -
Vvi3g0928 457 Pfam Ring finger domain 403 446 IPR001841 -
Vvi3g0928 457 SUPERFAMILY RING/U-box 400 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0928 Vvi-Chr3 9340156 9341529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0928 357 450 C3H Transcription Factor Family AT2G15530 43.617 1.23e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0928 K19041 - vvi:104878839 946.806