Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0913 ATGAATCATGGACCATCTGGTCAGCTGCCATCTTCCAGCAATCACGGAGTCATTGGAGTTTCTACATATGATCGAAAGAATTCTCAAGGCATCCAGGGGAATTTTCAGTATTTTAACGGCTTTGCAAGCTCTAGTTCTTCGGCTCCCCCTTTCAATACAAGGCATCTTGAATTCGGGGTTCCCGTGATGGATTCTGCATCTTTTGCCTTTGCCCAGCCGCAGTACAGAGGGAATAATGCTCCTTCAATCATGGAAGTAGGATCTCACAGAAGTGTGAGGAACAGATCAGGTGGTGTTGGGCTGGATTCTGTTCTGGCACATAATCATTACCATTTGGTGCAAGGAAACTATATTGGCCATCCTTTTCAGCCTTCTGGCGATCCCTGGGTTGACCAACAATCAGGCAATAATGGTAGTGGTGGGGGAACTTTGGCCTGGAATCATGGACCTGCTTTACCTTATTTGCATGGGAGCAACATCAGTGGAGGTTCTAGAGAGGCTGGGAATGTGGGTATACAGGGATATCATGATACATCTAGTGGCAGAAGTTCCACAGATTACCTTCAACCTCCTGTCCTTCACCGGCACCATAATCTTCATTATCCACCACCACCACCACCTATGCAAGGGGCAAGAAGCCATTTCCACCCTCAAGTAGTGGCATCTTCGTATAGACTTGCCACGATTAGTTCACGTAGTCCTGTGCCTCCTCAGGTCGGTGTAGAGGCAGGGCACAGGCATCCAGGACCTGTTCCACCTACTTGGATCAGGATAGATCGATCTCATCGAGGGGGAGTCGCACCTGAGGCAACATCGAGACATGGTAATCTGCCTTACTTGAGAACGCTCCCAGAAGAAGAAGTTGCCATACTAGATCTTTCAGCATCTTATCAAGTAGGGGAAGTAAGCACAGGGCTTTCAGAGGAATCCATTACAAATTGTCTAAAAACTAGAACTTATATATCTTCAACTTGTCTGAATCTGGAAGAGGGTGCAAGTATGGATCAGGAAAATGATTCTTGCATTATATGCCAGGAGGAGTATGAGAATGAAGAGAAGATTGGATTTCTTGATTGTGGGCATGAGTACCATGCAGATTGCTTGAAGAAGTGGGTGCTGGTGAAGAATGTCTGCCCCCTCTGCAGAGCCCCAGCGATGACCCCAAAAAAGAAGGATGTATAG 1182 0.4687 MNHGPSGQLPSSSNHGVIGVSTYDRKNSQGIQGNFQYFNGFASSSSSAPPFNTRHLEFGVPVMDSASFAFAQPQYRGNNAPSIMEVGSHRSVRNRSGGVGLDSVLAHNHYHLVQGNYIGHPFQPSGDPWVDQQSGNNGSGGGTLAWNHGPALPYLHGSNISGGSREAGNVGIQGYHDTSSGRSSTDYLQPPVLHRHHNLHYPPPPPPMQGARSHFHPQVVASSYRLATISSRSPVPPQVGVEAGHRHPGPVPPTWIRIDRSHRGGVAPEATSRHGNLPYLRTLPEEEVAILDLSASYQVGEVSTGLSEESITNCLKTRTYISSTCLNLEEGASMDQENDSCIICQEEYENEEKIGFLDCGHEYHADCLKKWVLVKNVCPLCRAPAMTPKKKDV* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0913 393 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g0913 393 SMART ring_2 341 381 IPR001841 -
Vvi3g0913 393 MobiDBLite consensus disorder prediction 165 187 - -
Vvi3g0913 393 Pfam Ring finger domain 339 382 IPR001841 -
Vvi3g0913 393 SUPERFAMILY RING/U-box 335 388 - -
Vvi3g0913 393 CDD RING-H2_RNF24-like 339 385 - -
Vvi3g0913 393 FunFam Uncharacterized protein 327 392 - -
Vvi3g0913 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 392 IPR013083 -
Vvi3g0913 393 MobiDBLite consensus disorder prediction 173 187 - -
Vvi3g0913 393 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Vvi3g0913 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 21 386 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0913 Vvi-Chr3 9146222 9147403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0913 293 386 C3H Transcription Factor Family AT2G15530 43.617 1.13e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0913 K19041 - vvi:100246312 791.956