Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0908 ATGAAGGAGTATGCATTTGAAGTGAAGATCATCAGTCCATTGAGGCATCAGAACTTGGTGCAGCTCATGGGCTGGTGCCATAACAAAAGAGAGCTCGTATTGGTTTGTGAGCTCATTCCAAATGGCAACTTAAGCTCCTGTCTTTTGGAAGAAAAAACCCTGCTAACATGGGCAATGAGGTATAAAATTGCTCTTGGCTTGGCCTCTTCGTTGCTCTACCTACATGAAGAATGGGAACAATGTGTGGCACATAGGGATATCAAATCGAGTAATGTGATGTTGGACTCAGATTTCAATGCCAAGCTTGGAGATTTTGGACTAGCCAGGCTTGTTGATCATGGGAAAGGGTCACAAACCACAGTTTTAGCTGGAACATGGGATACATGGCTCCTGAATGTCTCATGA 405 0.4395 MKEYAFEVKIISPLRHQNLVQLMGWCHNKRELVLVCELIPNGNLSSCLLEEKTLLTWAMRYKIALGLASSLLYLHEEWEQCVAHRDIKSSNVMLDSDFNAKLGDFGLARLVDHGKGSQTTVLAGTWDTWLLNVS* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0908 134 Gene3D Phosphorylase Kinase; domain 1 1 42 - -
Vvi3g0908 134 Gene3D Transferase(Phosphotransferase) domain 1 43 129 - -
Vvi3g0908 134 SUPERFAMILY Protein kinase-like (PK-like) 2 125 IPR011009 -
Vvi3g0908 134 FunFam ABL protein 1 42 - -
Vvi3g0908 134 Pfam Protein kinase domain 4 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0908 134 FunFam Os07g0541700 protein 39 125 - -
Vvi3g0908 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0908 134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672|GO:0006468
Vvi3g0908 134 PANTHER - 1 126 - -
Vvi3g0908 134 SMART tyrkin_6 1 131 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0908 Vvi-Chr3 9083016 9083420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0908 2 126 Receptor kinase-like Gene Family AT5G10530 68.000 1.14e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0908 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0908 - - vvi:100244573 227.639