Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0888 ATGGTGGAGAAGTCAAGCAAGGGTCGCCAAAAGATCGAAATTGCGAAAATACCGAAGAAAAATCATCTTCAAGTCACCTTCTCCAAGCGCAAGTCTGGGCTCTTCAAGAAGGCTAGTGAACTTTGCACTCTTTGTGGGGCAAATATTGCTATATTAGTTTTTTCCCCTGGTGGAAAGGTATTCTCTTTTGGTCATCCTGATGTTCGGTACATCGTCTATTCGTTCTTCGCTAACATACCTCCAACCAAACGTAGCGATCTCAACCTAATTGAAGCTCATGATCAGAATGCTAGTATCCACAAGCTCAACTTACAGCTCGCAGAAGTGCTTAACCAACTAGAAGCCGAGAAAAAGAGAGGTGAAATACTTGGCCAAATAAGAGCTAGCCAAGGCCAATGCTGGTGGGAAGCACCAATTGATGAGTTAAGCTTGTTTGAGCTTCAACAATTGAAGGTGTCCATGGAGGAGCTTAAGAAGATTGTAGTGAGTCAAGCTGAACTGCTTCTAATGGAGGGCAATGCTAACCCTTCTACTTTCAATAAGGTTAATGGGTACCCAATGGTTGATGATTTTGAGTTTGAGAGGAAACTCAGTGAGATTCATGGTCTTTCCATTGTGCCCCATGTCCATAATTTTGGTCATGGACTAGGCTTTTTCTGA 660 0.4288 MVEKSSKGRQKIEIAKIPKKNHLQVTFSKRKSGLFKKASELCTLCGANIAILVFSPGGKVFSFGHPDVRYIVYSFFANIPPTKRSDLNLIEAHDQNASIHKLNLQLAEVLNQLEAEKKRGEILGQIRASQGQCWWEAPIDELSLFELQQLKVSMEELKKIVVSQAELLLMEGNANPSTFNKVNGYPMVDDFEFERKLSEIHGLSIVPHVHNFGHGLGFF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0888 219 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Vvi3g0888 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Vvi3g0888 219 Coils Coil 99 119 - -
Vvi3g0888 219 CDD MADS 8 66 - -
Vvi3g0888 219 Gene3D - 19 85 IPR036879 GO:0003677|GO:0046983
Vvi3g0888 219 SUPERFAMILY SRF-like 8 80 IPR036879 GO:0003677|GO:0046983
Vvi3g0888 219 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Vvi3g0888 219 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Vvi3g0888 219 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Vvi3g0888 219 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Vvi3g0888 219 Gene3D - 86 185 - -
Vvi3g0888 219 PANTHER MADS BOX PROTEIN 9 161 - -
Vvi3g0888 219 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0888 Vvi-Chr3 8820035 8820694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0888 4 165 Type I MADS-box Gene Family AT5G60440 51.807 1.62e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g0888 SRF-TF 4.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0888 - - vvi:100263465 440.269