Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0887 ATGGCTACGGTGAGAAAAAGTAAGGGACGGCAGAAGGTTGAGATGACCAAAATGACGAAAGAAAGCAACCTACAGGTTACCTTCTCCAAACGCCGGTCTGGCCTTTTCAAGAAGGCAAGCGAGTTGTGCACACTTTGTGGTGCAGAAACAGCCATAATAGTCTTCTCTCCTGGCAAAAAGTTGTATTCCTTTGGCCATCCATGCGTCGAATCAATCATAGATCGGTTCCTTATGCGCAACCCTTTGCCCAACTCTGGTGCACTGCAACTCTTTGAGGCTCACCGTACTACAAATGTTCGCAACCTTAATGTGCAGCTCACTCAAGTGGTGAACCAACTAGAGGGTGAGAAAAAGCGAGGTGAAGCACTTACACAGATGTGGAAGGCATGCAAGCCACAGTGCTGGTGGGCAGCTCCAATTGAAGAGTTCAGCTTGGAGCAGCTTGAGCTTCTGAAGGTATCATTGGAAGATCTAAGAAGGAAAGTGGCAAGACAAGCTGATGAACTTATGATAGAGGCAAAAAATCCTCCTGCCTTTTTCCCAGGGAATTCTGTTGGAACGATTATGCCCTATGATGCACAGATGGCTGGATTCGACCCTTATAGTCATAAATATAACTTTGGTTATGGGGGTCCTTTTCTTTGA 645 0.462 MATVRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAETAIIVFSPGKKLYSFGHPCVESIIDRFLMRNPLPNSGALQLFEAHRTTNVRNLNVQLTQVVNQLEGEKKRGEALTQMWKACKPQCWWAAPIEEFSLEQLELLKVSLEDLRRKVARQADELMIEAKNPPAFFPGNSVGTIMPYDAQMAGFDPYSHKYNFGYGGPFL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0887 214 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi3g0887 214 PANTHER MADS BOX PROTEIN 10 164 - -
Vvi3g0887 214 Coils Coil 99 119 - -
Vvi3g0887 214 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi3g0887 214 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vvi3g0887 214 Coils Coil 145 175 - -
Vvi3g0887 214 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vvi3g0887 214 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vvi3g0887 214 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Vvi3g0887 214 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi3g0887 214 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi3g0887 214 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi3g0887 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi3g0887 214 Gene3D - 87 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0887 Vvi-Chr3 8793246 8793890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0887 4 184 Type I MADS-box Gene Family AT5G60440 55.978 1.25e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g0887 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0887 - - vvi:100248056 437.187