Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0886 ATGGTGAAGAAGCCAAGCAAGGGCCGCCAGAAGATCGAAATCTCAAAAATACCCAAGAAAAATCATCTACAAGTCACCTTCTCTAAAAGAAGGTCCGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTCTGTGGGGCAAATGTGGCTATCATAGTTTTTTCCCCGGCAGGGAAGGTGTTCTCCTTTGGGCACCCCGATGTTGAGTCCATCGTCGATCGGTTCTTCACGTGCAACCCTATACCCGAACCCAATGGTCTTCACCTAATCGAAGCTCATCGGAATGCTAGTGTCCGTGAGCTCAACCTGCAACTCACACAAGTTCTTAATCAACTAGAAGCTGAGAAAAAGAGAGGAGAAATACTTAGCCAAATGAGAAGAGCAAGCCAAACTCAATGCTGGTGGGAAGCCCCCATCAACGAGCTGAGTATGCCAGAGCTTGAACAGCTGAAGGTTTCCATGGAGGAACTAAAGAAGGTCGTACTGAGTCAAGGTGACAAGCTTTTGATGGAGGCTGCTAATCCTTCGCCTTTCTACATGATCAATGGTAGCTCTGCAATGGTTGATCACTTCGAGATTGAGAGGAAACCTAGTGAGATTCATGGTAATGTTCATAATTTTGGTTATGGACAGGGGTTCTTCTGA 645 0.4636 MVKKPSKGRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKVFSFGHPDVESIVDRFFTCNPIPEPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRGEILSQMRRASQTQCWWEAPINELSMPELEQLKVSMEELKKVVLSQGDKLLMEAANPSPFYMINGSSAMVDHFEIERKPSEIHGNVHNFGYGQGFF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0886 214 Gene3D - 85 176 - -
Vvi3g0886 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Vvi3g0886 214 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Vvi3g0886 214 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Vvi3g0886 214 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Vvi3g0886 214 CDD MADS_MEF2_like 8 79 IPR033896 GO:0000977|GO:0045944
Vvi3g0886 214 Gene3D - 19 83 IPR036879 GO:0003677|GO:0046983
Vvi3g0886 214 Coils Coil 95 118 - -
Vvi3g0886 214 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Vvi3g0886 214 FunFam Agamous-like MADS-box protein AGL62 19 84 - -
Vvi3g0886 214 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Vvi3g0886 214 PANTHER MADS BOX PROTEIN 9 162 - -
Vvi3g0886 214 SUPERFAMILY SRF-like 8 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0886 Vvi-Chr3 8776002 8776646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0886 1 194 Type I MADS-box Gene Family AT5G60440 53.807 2.70e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g0886 SRF-TF 3.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0886 - - vvi:100242931 426.017