Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0883 ATGGCTACAGTGAGGAAAAGCAAGGGTCGCCAAAGGGTGGAGATGGCCAAAATGACTAAAGAAAGTAATTTACAGGTTACTTTCTCCAAACGCCGATCCGGCCTTTTCAAGAAGGCTAGTGAATTATGCACACTTTGCGGTGTTGAAATCGCCATAGTAGTCTTCTCTCCTGGAAAAAAGGTGTATTCCTTTGGCCATCCTTGCGTGGAATCCATCATAGATAGATTCCTCACTAGAAACCCTTTGCCCAACTCTAGTGCACTGCAACTCTTTGAGGCTCACCGCAGTGCAAATGTTCGGGACCTTAACCTGCAACTTACTCAAGTGCTCAACCAACTAGAGATCGAGAAGAAGCGTGGCGAAGCGCTTACACAGATGAGGAAGGCCAGCCAAGCACAGTGCTGGTGGGCAGCTTCCATTGAGGAGCTCAGCTTTGAGCGGCTGGAGCTTCTGAAGGTGTCGCTGGAAAATCTTAAAAAGAACGTGGCGTTGCAGGTGGACAAGCTTATGATTGAGGCGTCGAATCCTCCAACATTTTTCCCCTCCAATTCTGTGGGAGCAGTTGTGCCTTATGATTCGCAGGTTGCTGGATTTGGCCCTCGTAGCTATGATTTTGGCTATGGGGGTGGTCGTTTGTTTTGA 642 0.4844 MATVRKSKGRQRVEMAKMTKESNLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGKKVYSFGHPCVESIIDRFLTRNPLPNSSALQLFEAHRSANVRDLNLQLTQVLNQLEIEKKRGEALTQMRKASQAQCWWAASIEELSFERLELLKVSLENLKKNVALQVDKLMIEASNPPTFFPSNSVGAVVPYDSQVAGFGPRSYDFGYGGGRLF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0883 213 Coils Coil 99 119 - -
Vvi3g0883 213 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Vvi3g0883 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi3g0883 213 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi3g0883 213 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Vvi3g0883 213 Gene3D - 87 177 - -
Vvi3g0883 213 PANTHER MADS BOX PROTEIN 10 164 - -
Vvi3g0883 213 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vvi3g0883 213 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi3g0883 213 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi3g0883 213 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi3g0883 213 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi3g0883 213 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0883 Vvi-Chr3 8744237 8744878 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0883 4 199 Type I MADS-box Gene Family AT5G60440 55.276 1.20e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g0883 SRF-TF 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0883 - - vvi:100249782 414.075