Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0881 ATGGCTCCAACGAGGAAAAGTAAGGGTCGCCAAAAGGTTGAGATGACTAAAATGACAAAAGAAAGTAACTTACAAGTTACTTTCTCCAAACGCCGATCTGGCCTTTTTAAGAAGGCCAGTGAATTATGCACACTTTGTGGTGCTGAAATTGCTATAATAGTCTTCTCTCCTGGGAAAAAGATGTATTCCTTCGGCCATCCTGGTGTTGAATCAATTATAGATCGGTTTCTTACCGGGAACCCTTTACCCCACTCTGGTGCACTGCAGCTCTTTGAGGCTCATCGTAGTGCAAATGTTCGTGACCTTAATATGCAACTCACTCAAGTTCTCAACCAACTAGAGGGTGAGAAGAAGCGCGGAGAAGCACTTACACAGATGAAGAAGGCCAGCCAAGCACAATATTGGTGGGCAGCTCCGATTGAGGAGCTTAGCTTCGAACAACTCGAGCTTCTGAAGGTGTCGCTAGAAAATCTTAAAAGGAATGTTGAAATGCATGCAGACAAGCATATGATGGAGGCATCGAATCCTCTGACTTTTTTTCTTTCGAGTTCTGTTGGAGCAGGTGTGCCTTATGATGCGCACATTGCTGCATTTGATCCTCTTAACTTTAACTTTGGTTATGGGGGTATAATTAGCTTAAGTAAGCAATTTGAAAATCAAAATTATAGAACATAA 675 0.4237 MAPTRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKMYSFGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGEALTQMKKASQAQYWWAAPIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLTFFLSSSVGAGVPYDAHIAAFDPLNFNFGYGGIISLSKQFENQNYRT* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0881 224 Coils Coil 99 119 - -
Vvi3g0881 224 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vvi3g0881 224 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Vvi3g0881 224 FunFam Agamous-like MADS-box protein AGL62 20 85 - -
Vvi3g0881 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi3g0881 224 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi3g0881 224 Coils Coil 148 168 - -
Vvi3g0881 224 PANTHER MADS BOX PROTEIN 10 164 - -
Vvi3g0881 224 CDD MADS_MEF2_like 9 80 IPR033896 GO:0000977|GO:0045944
Vvi3g0881 224 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi3g0881 224 Gene3D - 86 176 - -
Vvi3g0881 224 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi3g0881 224 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi3g0881 224 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0881 Vvi-Chr3 8696026 8697570 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0881 4 195 Type I MADS-box Gene Family AT5G60440 55.838 6.19e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g0881 SRF-TF 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0881 - - vvi:100251544 419.468