Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0859 ATGGCTGCAAAAAGGCCATCCAATTCTAGTATGTTTCATGGAGGGCTGTTTCTGCGGTTGTTGCTTGTAGTGTTAGTCTCAGCAAATGCAGCCTCGGCCGGTTCCATCGTCGAGTATCTGCCTGGCTATGGGAACCTTACTTTCAAGCTTGAAACCGGATACGTAAGCGTTGGAGACTCGGAGTTGTTCTACTACTTCATTGAGTCACAAGGGAACCCTCAGACTGACCCTTTTTTCCTCTGGCTCACTGGAGGCCCCGGTTGTTCTTCTTTCAATGGACTCATTTACGAAATCGGTCCAATGGAGTTTGATATCCACAACTACCCAGGAGGGTTACCAAGATTGCTGCCTTACAAATATGCATGGACAAAGACAGCCAGCATATTATTCCTTGATGCCCCAGTTGGCACTGGCTTCTCCTACTCAACATCCGCGGATGGTTGGTCTAGTTCAGACACAGATTCAGCCCTTGAAACCTATGAGTTCCTGAGGAAGTGGTTGATTGAACACCCTAAATACCTCCCTCTTCAACTCTATGTGGGTGGTGATTCATATTCAGGCATAATCGTTCCTCTAGTCGTCAAACATATAGTAGATGCTATAGATGAACACACTGTGCCACGATTTAACCTACAAGGGTATTTGGTTGGGAGCCCGACAACAGATGAAAACATCAATACAAATGCAAAAGTTGTATTTGCTCACCGGTTGGCCCTTATATCCGATGAGCTCTATGAGGCTGCAAAAGAAAACTGCAATGGGAACTATGCAGATGTAGATCCATCTAACACAAAGTGCTTAAGTAGTCTTGGTGAAATCCAACATTGTGTCAAAGACTTGTTCCGTAATGATATTTTGGAGCCCAAGTGTGTCTTTGAATCCCCAGAACCAACCCGAAGATCTCTGGATGAGAAGCCTGGAGACTTCATTCTTAATACACCAAAACTTGAAGAGTTCTGGTGCCGGAACTTCAATTATGCATTGTCCTACATCTGGGCTAATGATGAAAGTGTCCAAGAAGCATTAAATGTCCGAGTGGGAACTGTAAAATATTGGTCGAGGTGCAACAAGAGCTTGTCGTACACAAAAGATGTTCAGAGCGTAATCGATGTTCACCGTTATCTCAGTAAAAAGCAGCTGGAAGTTCTTGTAGAAGTTGGCGATCGCGACTTGGTTGTTCCATACCCGGGGGCGGTAGAATGGATTAGACTCCTCAATTTGACAATTGTTAGTCCTTGGCGGCCATGGTTTGTTGATGGTGAAATTGCAGGATACACGGAGAAGCATTCACAAAATGGGTACCGATTGACTTATGCGACCGTGAAGGGTGCAGGCCACACGGCTCCAGAGTACTATAGAAGAGAATGTTACTACATGTTCAAGAGGTGGGTGCATTACTACCCTCTCTAG 1410 0.4518 MAAKRPSNSSMFHGGLFLRLLLVVLVSANAASAGSIVEYLPGYGNLTFKLETGYVSVGDSELFYYFIESQGNPQTDPFFLWLTGGPGCSSFNGLIYEIGPMEFDIHNYPGGLPRLLPYKYAWTKTASILFLDAPVGTGFSYSTSADGWSSSDTDSALETYEFLRKWLIEHPKYLPLQLYVGGDSYSGIIVPLVVKHIVDAIDEHTVPRFNLQGYLVGSPTTDENINTNAKVVFAHRLALISDELYEAAKENCNGNYADVDPSNTKCLSSLGEIQHCVKDLFRNDILEPKCVFESPEPTRRSLDEKPGDFILNTPKLEEFWCRNFNYALSYIWANDESVQEALNVRVGTVKYWSRCNKSLSYTKDVQSVIDVHRYLSKKQLEVLVEVGDRDLVVPYPGAVEWIRLLNLTIVSPWRPWFVDGEIAGYTEKHSQNGYRLTYATVKGAGHTAPEYYRRECYYMFKRWVHYYPL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0859 469 FunFam Carboxypeptidase 320 469 - -
Vvi3g0859 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Vvi3g0859 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Vvi3g0859 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vvi3g0859 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Vvi3g0859 469 FunFam Serine carboxypeptidase-like 11 31 469 - -
Vvi3g0859 469 Pfam Serine carboxypeptidase 44 465 IPR001563 GO:0004185|GO:0006508
Vvi3g0859 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 451 IPR001563 GO:0004185|GO:0006508
Vvi3g0859 469 Gene3D alpha/beta hydrolase 37 467 IPR029058 -
Vvi3g0859 469 SUPERFAMILY alpha/beta-Hydrolases 40 468 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0859 Vvi-Chr3 8252700 8257070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0859 332 469 Calmodulin-binding Proteins AT2G22960 44.203 3.09e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0859 K16296 - vvi:100265220 963.37