Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0856 ATGAGATTGTTCCTAAGCGTGATATTACTATTGCGGACAAGTCGAAGAAGAGAATTGTTGGATAATGCTGATAAATTTCCAATTATTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGGTGTATCACTGTCAACATTGAGTAAAAGTATTGCACTGGTAAATCCAGATACACCGGAATCAAAAAAGTTGAGATCCTGGTATCATGATTACCATGGTAAAGTAGCTTCAATGGCTTGTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTGAGGTCCATGTACTATGACAGGGTTTCCCTTTCTCATGTAACCAGCAACCCATCTTTGGGTGAAGACAAGCCTTCATTTTTTAGCATCAGAGCATACATAAGCTTCATCAAGCCTGAGCAAACAATGTGGTACCAGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGAATCTGGGTATTGGTGTGAAGGATGTGAAAAGAATGATGATGAGTGCAGTTGA 507 0.3964 MRLFLSVILLLRTSRRRELLDNADKFPIIAIKSLKVGDFQGVSLSTLSKSIALVNPDTPESKKLRSWYHDYHGKVASMACIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPEQTMWYQACKTCNKKVTDAIESGYWCEGCEKNDDECS* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0856 168 Gene3D - 82 168 IPR012340 -
Vvi3g0856 168 SUPERFAMILY Nucleic acid-binding proteins 97 167 IPR012340 -
Vvi3g0856 168 Pfam Replication factor-A C terminal domain 119 167 IPR013955 -
Vvi3g0856 168 Gene3D - 13 78 IPR012340 -
Vvi3g0856 168 SUPERFAMILY Nucleic acid-binding proteins 21 69 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0856 Vvi-Chr3 8241138 8242075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0856 11 168 Core DNA Replication Machinery Family AT5G08020 68.354 1.87e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0856 K07466 - vvi:100255412 285.804