Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0851 ATGTTAAGATGGAAGGCCAATGATGCTGGGATTTTCTTAGCATATACTCGTAGCTGCCAAAAAGATGGATGGGAAGCAAATAAGGAGGCAGTAGAGTTCAGAGAATTAGAAGCAACTAACCGGCCGTTGTCAGATTATCAACTTCAGAGAGGACCTGACTTCGACAAGAAGTGTAGACAGTCATGCAAAGAAGATCACCTCTGTGCCGTTGCTATCTATGGCAGCAATATGTGTTGGAAGAAGAAGCTCCCTCTTTCAAATGGAAGACGAGGCAAAATTGCTGTTAAATGTACTACCGCTACTGTCAAGGTACCCACAAATAATGCTACACGAAGATGCCGGGATAAGTCAACCTTGATCCTTGTTGGGTCAGTACTCCTTGGCAGCTCTGCTTTCTTTAATCTCTTTTTACTGTCAGCTATTCTTGCAGTTGCTCTCTTCTGCTATCACAAGAAATCAACAAAACTCCAGTCTGTTTCAATCATATTTGCGACAACCAGTGGGGTTTTAGCATCAGATCCCGAGAGGTTTGTTGCTGTGAAGAAGTTACATAAGGTGATTCAAGAAGGCGAGAAGGAATTCAAAACAGAAGTGACTGTAATCAGCCAGACCCACCATAGGAATTTTGTCGGTTTGCTAGGCTACTGCAATGAGGGAGAGCACCTACATCTGGTATACGAGTTCATGAGCAATGGATCTTTAGCAAACTTGCTGTTTGGAATATTCAGGCCAGAGTGGAGCCAAAGAGTCCAGATTGCCTTTGAGATTGCCAGAGGGCTAATGTACTTACACGAAGAGTGCTGCACCCAGATCATCCATTGTGATATAAAGCCTCAAAACATATTCCTGGACGACCACTTTACGCCTAGGATTTCAGACTTTGGACTAGCAAAGCTTTTGTTGGCTGATCAAGCTCGAACTACCCGAACAGGCATTAGAGGGACCATAGGGTACTTTGCACCCGAATGGTTCAGGAAAGAATCAATCACAGCTAAAGTTGATGTCTACAGTGATGGTGGAATGTTACTGGAGATCATATGTTCCAAGTCCAGTGTTGTATTTGCAGATAACGAAGAAGAAGAGGACGTGCTAATGGATTGGGCTTACGAATGCTATATGGAAGGGAAATTGGAGGAGATGGTAGACGATGATGAGGAAGCAAGGAAGGATACAAAGAGGGTGGAGAGGATGGTAAAGGTTGCATTTTGGTGCATTCAAGAGGATCCAGGGCTAAGGCCAACAATGAGGAAGTTTTATGGGAATGCTTCCTTTCAATCCCTAGAAACACTATCATTTGGGGACATGCCGAACTGGGAGAAATGGTTATGTTGTGGAGAATTCCCTCATCTCCGGGAGCTTTCTATACGACACTGTCCCAAACTCACTGGAAAATTGCCAAAACGGCTTCTTTCACTGGTGAAACTTCAAATTCATGAATGTCCACAACTGCTTATGGCTTCACTCACAGTTCCTGCTATTCGTGAATTGAGGATGGTGGATTTTGGTAAATTGCAGTTGCAAATGCCAGCTTGTGACTTCACAACTCTTCAAACTTCAGAAATTGAAATTTTAGACGTGTCTCAGTGGAAGCAACTTCCAATGGCACCACACCAGCTCTCAATCAGAAAATGTGATCATGTGGAATCTCTATTAGAGGAGGAAATCTTGCAAACCAACATACATGATTTGGAAATCTATGATTGTAGTTTTTCCAGATCCCTGCACAAGGTTGGTTTACCCACTGCATTGAAATTACTACCAATCTCTGAGTGTTTGGAATTAGAGTTTCTCCTACCTGAGTTGTTCAGATGCCATCTTCCATTCCTTGAAAGCCTAAGCATCAATGGTGGTGTTATCGATGATTCTCTCTCGTTATCCTTCTCATTAGGCATCTTCCCCAAGTTGACTTATTTCACAATCGATGGTCTTAAGGGGCTTGAGAAGCTCTCCATTTTTATTTCAAATGGAGATCCCACATCTTTATGTTTCTTGCATCTACTTAATTGCCCTAATCTTGAATCTATCGAATTGCTCGCACTTAACTTGAAGTGTTGTTGGATCTCGAGTTCCTCCAAGCTCAGGTCGTTGGCGCACATGCACTCATCTATACAGGAGCTGCATTTATGGGATTGTCCAGAATTATTGTTTCAGAGAGAGGGTTTGCCTTCCAACCTATGTGAACTTCAATTTCGAAGGTGTAACAAAGTCATGCCTCAGGTGGACTGGGGTTTGCAAAGGTTGACCTCTCTTACACGTTTAAGAATGGAAGGTGGATGTGAAGGCGTTGAATTATTTCCCAAGGAGTGTCTGCTGCCCTCTTCTCTAACTTCTCTTGAAATTGTAAAGCTTCCCAATCTCAAGTCTCTTGACAGCGGGGGACTTCAACAACTCACCTCTCTTCTAAAATTAGAGATCATAAACTGCCCAGAGCTCCAGTTCTCGACAGGATCAGTTCTTCAACACCTTATCTCTCTCACAGAATTACAAATTGATGAATGCCCAAACCTCCAATCCTTGACAGAAGTGGGTCTTCAACATCTCACCTCTCTTGAAACATTGCATATCGAGAATTGCCCTAAGCTCCAATACTTGACAAAACAGAGACTGCAAGACTCCTCGGGTCTTCAACACCTCATCTCTCTCAAACAAATCCAAATCAAGGACTGCCCAATGCTCCAATCATTGACAAAAGAGGGTCTTCAACACCTCATCTCTCTTAAAACATTGGAGATCATAGACTGCCGTAAGCTCAAATACTTGACAAAAGAGAGACTTCCAGACTCCCTCTCTTTTCTGCGTGTCAACGGGTGTCCTTTACTAGAAAAGCCATGTCAATTTGAGAAAGGGAAAGAATGGCGTTATATGGCTCATATTCCAAAAGTAGTGATCAACCATGTGCTATTTTAA 2907 0.4286 MLRWKANDAGIFLAYTRSCQKDGWEANKEAVEFRELEATNRPLSDYQLQRGPDFDKKCRQSCKEDHLCAVAIYGSNMCWKKKLPLSNGRRGKIAVKCTTATVKVPTNNATRRCRDKSTLILVGSVLLGSSAFFNLFLLSAILAVALFCYHKKSTKLQSVSIIFATTSGVLASDPERFVAVKKLHKVIQEGEKEFKTEVTVISQTHHRNFVGLLGYCNEGEHLHLVYEFMSNGSLANLLFGIFRPEWSQRVQIAFEIARGLMYLHEECCTQIIHCDIKPQNIFLDDHFTPRISDFGLAKLLLADQARTTRTGIRGTIGYFAPEWFRKESITAKVDVYSDGGMLLEIICSKSSVVFADNEEEEDVLMDWAYECYMEGKLEEMVDDDEEARKDTKRVERMVKVAFWCIQEDPGLRPTMRKFYGNASFQSLETLSFGDMPNWEKWLCCGEFPHLRELSIRHCPKLTGKLPKRLLSLVKLQIHECPQLLMASLTVPAIRELRMVDFGKLQLQMPACDFTTLQTSEIEILDVSQWKQLPMAPHQLSIRKCDHVESLLEEEILQTNIHDLEIYDCSFSRSLHKVGLPTALKLLPISECLELEFLLPELFRCHLPFLESLSINGGVIDDSLSLSFSLGIFPKLTYFTIDGLKGLEKLSIFISNGDPTSLCFLHLLNCPNLESIELLALNLKCCWISSSSKLRSLAHMHSSIQELHLWDCPELLFQREGLPSNLCELQFRRCNKVMPQVDWGLQRLTSLTRLRMEGGCEGVELFPKECLLPSSLTSLEIVKLPNLKSLDSGGLQQLTSLLKLEIINCPELQFSTGSVLQHLISLTELQIDECPNLQSLTEVGLQHLTSLETLHIENCPKLQYLTKQRLQDSSGLQHLISLKQIQIKDCPMLQSLTKEGLQHLISLKTLEIIDCRKLKYLTKERLPDSLSFLRVNGCPLLEKPCQFEKGKEWRYMAHIPKVVINHVLF* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0851 968 SMART serkin_6 156 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0851 968 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 229 430 - -
Vvi3g0851 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Vvi3g0851 968 Gene3D Phosphorylase Kinase; domain 1 165 229 - -
Vvi3g0851 968 Pfam Protein kinase domain 169 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0851 968 ProSiteProfiles Protein kinase domain profile. 121 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0851 968 Gene3D Ribonuclease Inhibitor 819 952 IPR032675 -
Vvi3g0851 968 Gene3D Ribonuclease Inhibitor 495 682 IPR032675 -
Vvi3g0851 968 Gene3D Ribonuclease Inhibitor 420 494 IPR032675 -
Vvi3g0851 968 Gene3D Ribonuclease Inhibitor 683 815 IPR032675 -
Vvi3g0851 968 SUPERFAMILY L domain-like 423 937 - -
Vvi3g0851 968 SUPERFAMILY Protein kinase-like (PK-like) 174 427 IPR011009 -
Vvi3g0851 968 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 19 417 - -
Vvi3g0851 968 Gene3D Transferase(Phosphotransferase) domain 1 230 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0851 Vvi-Chr3 8213605 8218387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0851 177 415 Receptor kinase-like Gene Family AT1G60800 41.393 1.59e-51 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi3g0851 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0851 - - vvi:100855373 1072