Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0845 ATGGGTCTCATGTATCTGCATTTTCTGCTGCTTCTGCTTTTCTCGGGGAAGGCAGTGTCCCGCAACATTGTCAAGACTCTACCAGGTTTCTCTGGTGAACTACCCTTTAAGCTTGAAACTGGATATGTGAGCGTGGGTGATATAGAGTTCTTCTACTACTTTGTGGAGTCTCAAGGCAACCCTGGAGCTGACCCTCTTATTCTTTACATGAATGGAGGCCCTGGTTGTTCTGGTTTGAATGGCTTCTTTTATCAAGTTGGCCCAGTAGTTTTCAACACTACAGATTATACTGGAGGTATACCAACGTTGCTACCTTACCCTCGCTCATGGACTAAGACGGCCAACATAATATTTGTAGATGCACCTGTGGGTACTGGCTTCTCCTATGCAACAACGTCCCAAGCCTACACCACCTCAGACACATTGTCCGTCATTCAGACTCTTGGGTTTTTGAGAAATTGGTTGAATGATCACCCGGATTTCAAGTTGAATCCACTCTTTATTGGGGCTGATTCCTATTCAGGCCTAATTGCTCCCATCATTGCTCAGGAAATAATGGATGGAAATGGAGTTGGAGAAGAACCCCACATTAATCTCAAAGGATATTTGATCGGAAGCCCTCATACTGATACGACCATTGAATTGAATTCAAGAATCGTATATGCTCACCGGATGGCACTTATATCAGATGCACTCTATGAGGCTGCCAAAACAGGTTGCAATGGCAGGTATGTTGATATAGATCCCTCCAACGCAAAATGTGTAGAAGCACTTGAATCTATCTCACTGTGCATAGAGCAAGTAAGTCTCCAGGATATTTTGGAGCCTAAATGTTCCTTCATATCCCCAAAGCAAAACAAAGAAATTAGAAGATCTCTCCGGGAGAATTCAAGAAGTTTTCTCCTTCCATCACAATATAGAACTGGCAATGATTGGTGTCGGAATTTCGAGCATTCGCTCTCTGATATATGGGCGAACTACAAAAGCGTCCAAGATGCCCTTTACATTAGACCGGGAACAGTGGAAGAATTTTTTAGGTGCAACAGTAGCCTATCTTATACTGAGAATGTCAATAATGTGTTTGGCTATCATAAAAACCTCACCAACTCAGGCCTGCGAGTCTTAGTTTTCAGTGGTGATCATGACATGGTTATTCCACATGTTGGCATCGAGCAATGGATAAAATCTCTCAATATTTCTTTAGGCAGTGATTGGCGACCGTGGTTTGTGGATGGTCAAATTGGAGGGTACACAAGGAAGTATGTCAACAAGGCCTATAGCTTAACATATTCAACTTTAAAGGGAGCTGGCCATTCACCCACTGAGTACAGACGTAGGGAAAGTTATGAGATGTTTTATAGGTGGATCCACCATTATCCTCTCTAG 1386 0.43 MGLMYLHFLLLLLFSGKAVSRNIVKTLPGFSGELPFKLETGYVSVGDIEFFYYFVESQGNPGADPLILYMNGGPGCSGLNGFFYQVGPVVFNTTDYTGGIPTLLPYPRSWTKTANIIFVDAPVGTGFSYATTSQAYTTSDTLSVIQTLGFLRNWLNDHPDFKLNPLFIGADSYSGLIAPIIAQEIMDGNGVGEEPHINLKGYLIGSPHTDTTIELNSRIVYAHRMALISDALYEAAKTGCNGRYVDIDPSNAKCVEALESISLCIEQVSLQDILEPKCSFISPKQNKEIRRSLRENSRSFLLPSQYRTGNDWCRNFEHSLSDIWANYKSVQDALYIRPGTVEEFFRCNSSLSYTENVNNVFGYHKNLTNSGLRVLVFSGDHDMVIPHVGIEQWIKSLNISLGSDWRPWFVDGQIGGYTRKYVNKAYSLTYSTLKGAGHSPTEYRRRESYEMFYRWIHHYPL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0845 461 FunFam Carboxypeptidase 313 461 - -
Vvi3g0845 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 441 IPR001563 GO:0004185|GO:0006508
Vvi3g0845 461 Gene3D - 313 460 - -
Vvi3g0845 461 SUPERFAMILY alpha/beta-Hydrolases 24 460 IPR029058 -
Vvi3g0845 461 Gene3D alpha/beta hydrolase 17 288 IPR029058 -
Vvi3g0845 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 129 IPR001563 GO:0004185|GO:0006508
Vvi3g0845 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 179 IPR001563 GO:0004185|GO:0006508
Vvi3g0845 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Vvi3g0845 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 118 IPR001563 GO:0004185|GO:0006508
Vvi3g0845 461 FunFam Serine carboxypeptidase-like 19 17 284 - -
Vvi3g0845 461 Pfam Serine carboxypeptidase 28 457 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0845 Vvi-Chr3 8141417 8145242 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0845 320 461 Calmodulin-binding Proteins AT2G22960 45.070 6.55e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0845 K16296 - vvi:100249719 927.932