Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0844 ATGATTTCCACTTTCTTCTTCCTAATATTCCCTTCTGCAACTTCATTGTCCTTCAACTTCACCACCTTTGAACCAAATAATGGTCAAATTTCCTTTGAAGGAGAGGCTCGATATTCTTCTGATGATGACATCCAACTGACCAGAGACGTGCAGGACAAATCAATGGATTCTAGTTGGGGTCGAGCCATATATAAAGAGCAGTTGTATCTCTGGGATCGGACCTCCAGAAATCTAACTGATTTCGCTACCAATTTCTCCTTTGTCATTAACTCACGGAACAAAAGTGCTTATGGCGATGGAATCACGTTCTTCCTTAACGGTACCCAATTGCCTTCAAATGTATCGGGAGAAAACCTTGGTCTCACGAAGGATAACGTGACAAACACAACTGTAATTAGTTTTGTTGCAGTGGAGTTTGATACATTTTCAAACAAGGCCAAAAGGGATCCGGTGAGTGATCATGTTGGTATTGATATTAACTCTACGATATCTGTCAAAACAGTGAACTGGTCCAGCAATATAGGGGAAGGAAAGCTAAATCATGTTTCCATCCGTTATACTTCTAGTTCACAAAATCTGAGTGTCGTTCTAATTACTGAGTTTATGGACAATAAAACTACCTCCCAAAGCCTCTCCTACAAAGTTGATCTGAGGGAATACTTGCCAGAATTCGTTACTATTGGCTTCTCAGGCGCAACAGGAAAAGCAGTCCAGATAAACAACATTTACTCGTGGAATTTCAGTTCAACTTTGCAACCTCCCAATCCTGTAGAACCAGGAGATGGAAAGAAAACAGGATTTGTGGTGGGATTGAGTGTTGGTGCAGTTGTTGTAGTATGTGGGTTGGGATTGGTTTGGCATCACTTGAGGAAGAAGAGGAATAATGGTGGAGAAGAAAATGGTACTGACTCTGACCTAGTCATGGACGAAGACTTTGAGAAGGGTACTGGACCTAGGAAGTTTTCCTTTGACGAATTGGCTCTTGCAACCAGTAACTTTGCGGAGGAGGAAAAGCTTGGAGAGGGAGGGTTCGGTGGGGTCTATAGAGGCTTCTTGAGGGAACTGAACTCTTATGTTGCAGTTAAGAGAGTATCAAGGGGGTCCAAACAAGGGATGAAGGAGTACGCATCTGAAGTGAAGATCATCAGTCGATTGAGGCATCGAAACTTGGTGCAGCTTATGGGCTGGTGCCATAAAAAAAGAGAACTCCTATTGGTTTATGAGCTCATGCCAAATGGCAACTTAAGCTCCCGTCTTTTGGACGAAAAAACCCTGCTAACATGGGCAGTGAGGTATAAAATTGCTCTTGGCTTGGCCTCTTCGTTGCTCTACCTACATGAAGAATGGGAACAATGTGTGGTACATAGGGATATCAAACCGAGTAATGTGATGTTGGACTCAGATTTCAACACTAAGCTTGGAGATTTTGGACTAGCCAGGCTCGTTGATCATGGCAAAGGGTCACAGACCACAGTTTTAGCTGGAACCATGGGGTACATGGCTCCTGAATATCTCATGACAGGCAAGGCCAGCAAGGAAACTGATGTCTATAGTTTCGGGATTGTTGCCTTAGAAATCTACTGTGGGAGAAGACCTGTGGAACCAAAAGCTAAAGAGAAGCAGGTCAGATTGGTAGAATGGGTCTGGGACCTCTATGAAGTAGGAAAGCTTCTTGATGCGGCTGATCCAAGACTATCGGGCGATTTTGATGAAGAACATATGGAACGATTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTGCAATCTTCGACCTTCAATAAGGCAAGCAATTAATGTCCTTAATTTGGAAGCTTCACTACCTCTTCTTCCTTTAAAAATGCCTGTGCCAATGTAG 1860 0.4328 MISTFFFLIFPSATSLSFNFTTFEPNNGQISFEGEARYSSDDDIQLTRDVQDKSMDSSWGRAIYKEQLYLWDRTSRNLTDFATNFSFVINSRNKSAYGDGITFFLNGTQLPSNVSGENLGLTKDNVTNTTVISFVAVEFDTFSNKAKRDPVSDHVGIDINSTISVKTVNWSSNIGEGKLNHVSIRYTSSSQNLSVVLITEFMDNKTTSQSLSYKVDLREYLPEFVTIGFSGATGKAVQINNIYSWNFSSTLQPPNPVEPGDGKKTGFVVGLSVGAVVVVCGLGLVWHHLRKKRNNGGEENGTDSDLVMDEDFEKGTGPRKFSFDELALATSNFAEEEKLGEGGFGGVYRGFLRELNSYVAVKRVSRGSKQGMKEYASEVKIISRLRHRNLVQLMGWCHKKRELLLVYELMPNGNLSSRLLDEKTLLTWAVRYKIALGLASSLLYLHEEWEQCVVHRDIKPSNVMLDSDFNTKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPEYLMTGKASKETDVYSFGIVALEIYCGRRPVEPKAKEKQVRLVEWVWDLYEVGKLLDAADPRLSGDFDEEHMERLMIVGLWCAHPDCNLRPSIRQAINVLNLEASLPLLPLKMPVPM* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0844 619 FunFam L-type lectin-domain containing receptor kinase IX.1 14 258 - -
Vvi3g0844 619 ProSiteProfiles Protein kinase domain profile. 333 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0844 619 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Vvi3g0844 619 ProSitePatterns Legume lectins beta-chain signature. 135 141 IPR019825 -
Vvi3g0844 619 Gene3D Transferase(Phosphotransferase) domain 1 410 617 - -
Vvi3g0844 619 Gene3D Phosphorylase Kinase; domain 1 318 409 - -
Vvi3g0844 619 CDD lectin_legume_LecRK_Arcelin_ConA 16 251 IPR001220 GO:0030246
Vvi3g0844 619 SUPERFAMILY Concanavalin A-like lectins/glucanases 14 251 IPR013320 -
Vvi3g0844 619 FunFam Lectin-domain containing receptor kinase A4.3 410 619 - -
Vvi3g0844 619 PANTHER - 44 603 - -
Vvi3g0844 619 FunFam L-type lectin-domain containing receptor kinase IX.1 318 409 - -
Vvi3g0844 619 Pfam Protein kinase domain 334 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0844 619 CDD STKc_IRAK 339 603 - -
Vvi3g0844 619 Pfam Legume lectin domain 15 256 IPR001220 GO:0030246
Vvi3g0844 619 ProSitePatterns Legume lectins alpha-chain signature. 221 230 IPR000985 -
Vvi3g0844 619 Gene3D - 13 254 - -
Vvi3g0844 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vvi3g0844 619 SMART serkin_6 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0844 619 SUPERFAMILY Protein kinase-like (PK-like) 317 605 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0844 Vvi-Chr3 8122253 8124112 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0844 6 617 Receptor kinase-like Gene Family AT5G10530 49.278 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0844 Pkinase 9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0844 - - vvi:100244573 1169.45