Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0840 ATGGACGATAAAACTACCTCCCAAAGCCTCTCCTACAAAGTTGATCTGAGGGAATACTTGCCAGAATTTGTTACTATTGGCTTCTCAGGCGCAACAGGAAAAGCAGTCCAGATAAACAACATTTACTCGTGGAATTTCAGTTCAACTTTGCAACCTCCCAATCCTGTAGAACCAGGAGATGGAAAGAAAACAGGATTTGTGGTGGGATTGAGTGTTGGTGCAGTTGTTGTAGTATGTGGGTTGGGATTGGTTTGGCATCACTTGAGGAAGAAGAGGAATAGTGGTGGAGAAGAAAATGGTACTGACTCTGACCTAGTCATGGACGAAGACTTTGAGAAGGGTACTGGACCTAGGAAGTTTTCCTTTGACGAATTGGCTCTTGCAACCAGTAACTTTGCAGAGGAGGAAAAGCTTGGAGAGGGAGGGTTCGGTGGGGTCTATAGAGGCTTCTTGAGGGAACTGAACTCTTATGTTGCAGTTAAGAGAGTATCAAGGGGGTCCAAACAAGGGATGAAGGACTTATGGGCTGGTGCCATAAAAAAAAGAGAGCTCCTATTGGTTTATGAGCTCATGCCAAATGGCAACTTAAGCTCCCGTCTTTTGGACGAAAAAACCCTGCTAACATGGGCAGTGAGGTATAAAATTGCTCTTGGCTTGGCCTCTTCGTTGCTCTACCTACATGAAGAATGGGAACAATGTGTGGTACATAGGGATATCAAATCGAGTAATGTGATGTTGGACTCAGATTTCAACGCTAAGCTTGGAGATTTTGGACTAGCCAGGCTCGTTGATCATGGCAAAGGGTCACAGACCACAGTTTTAGCTGGAACCATGGGGTACATGGCTCCTGAATGTCTCATGACAGGCAAGGCCAGCAAGGAAACTGATGTCTATAGTTTCGGGATTGTTGCCTTAGAAATCTGCTGTGGGAGAAGACCTGTGGAACCAAAAGCTAAAGAGAAGCAGATCAGATTGGTAGAATGGGTCTGGGACCTCTATGGAGTAGGAAAGCTTGTTGATGCCGCTGATCCAAGACTCTCGGACGATTTTGATGAAGAACAAATGGAACGATTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTGCAATCTTCGACCTTCAATAAGGCAAGCAATTAATGTCCTTAATTCGGAAGCTTCACTACCTCTTCTTCCTTTAAAAATGCCTGTGCCAATGTATTATTCTCCTCCAGTGCTACAAACAATATCGTGTGGCCCCACCATTTCTGAGAGCATCCACACCTCATCATCAAAGCTCTTTGAATCTCCCAGTTCAACCTCTACTCCAGCCGCATCCCTTTTGCACACACGCTAA 1338 0.4522 MDDKTTSQSLSYKVDLREYLPEFVTIGFSGATGKAVQINNIYSWNFSSTLQPPNPVEPGDGKKTGFVVGLSVGAVVVVCGLGLVWHHLRKKRNSGGEENGTDSDLVMDEDFEKGTGPRKFSFDELALATSNFAEEEKLGEGGFGGVYRGFLRELNSYVAVKRVSRGSKQGMKDLWAGAIKKRELLLVYELMPNGNLSSRLLDEKTLLTWAVRYKIALGLASSLLYLHEEWEQCVVHRDIKSSNVMLDSDFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECLMTGKASKETDVYSFGIVALEICCGRRPVEPKAKEKQIRLVEWVWDLYGVGKLVDAADPRLSDDFDEEQMERLMIVGLWCAHPDCNLRPSIRQAINVLNSEASLPLLPLKMPVPMYYSPPVLQTISCGPTISESIHTSSSKLFESPSSTSTPAASLLHTR* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0840 445 Pfam Legume lectin domain 4 55 IPR001220 GO:0030246
Vvi3g0840 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vvi3g0840 445 MobiDBLite consensus disorder prediction 423 445 - -
Vvi3g0840 445 Gene3D Transferase(Phosphotransferase) domain 1 191 404 - -
Vvi3g0840 445 ProSitePatterns Legume lectins alpha-chain signature. 20 29 IPR000985 -
Vvi3g0840 445 SUPERFAMILY Concanavalin A-like lectins/glucanases 4 155 IPR013320 -
Vvi3g0840 445 SMART serkin_6 132 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0840 445 FunFam Lectin-domain containing receptor kinase A4.3 191 403 - -
Vvi3g0840 445 Pfam Protein kinase domain 133 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0840 445 Gene3D Phosphorylase Kinase; domain 1 117 180 - -
Vvi3g0840 445 ProSiteProfiles Protein kinase domain profile. 132 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0840 445 Gene3D - 1 56 - -
Vvi3g0840 445 SUPERFAMILY Protein kinase-like (PK-like) 116 416 IPR011009 -
Vvi3g0840 445 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Vvi3g0840 445 PANTHER - 7 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0840 Vvi-Chr3 8018981 8020373 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0840 3 402 Receptor kinase-like Gene Family AT5G10530 52.009 1.46e-140 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0840 Pkinase 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0840 - - vvi:100265149 733.406