Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0838 ATGGATGATTGCAACGCTGGAATTACCCCTACCCAATCTCACAAACTTCTTTCCTTTCATCTTTGCTTCATGATTTCCATTTTCTTCTTCCTAATATTCCCTTCTGCAACTTCATTGTCCTTCAACTTCACCACCTTTGAACCAAATAATGGTCAAATTTCCTTTGAAGGAGAGGCTCGATATTCTTCTTATGATGGCATCCAACTGACCAGAAACCAGCAGGACAAAACAATGGGTCATAGTTGGGGTCGAGCCATATATAAAGAGCAGTTGTATCTCTGGGATCGGACCTCCAGAAATCTAACTGATTTCGCTACCAATTTCTCCTTTGTCATTAATTCACTGAACAGGAGTGTTCATGCCGATGGAATAACATTCTTCCTTAACGGTACCCAATTGCCTTCAGGTAAGTTTGGAGAAAACCTTGGTCTCACGAATAACGTGACAAACACAACTGTAATTAGGTTTGTTGCAGTGGAGTTTGATACATTTTGTAACAAGGCCAAAAGGGATCCGGTGAGTGATCATGTTGGTATTGATATTAACTCTACGATATCTGTCAAAACAGTGAACTGGTCCAGCAATATAGAGGAAGGAAAGCTAAATCATGTTTCCATCCGTTACACTTCTGGTTCACAAAATCTGAGTGTTGTTCTAATTACTGAGTTTATGGACGATAAAACTACCTCCCAAAGCCTCTCCTACAAAGTTGATCTGAGGGAATACTTGCCAGAATTCGTTACTATTGGCTTCTCAGGCGCAACAGGAAATTCATTCCAGATACACAACATTTACTCGTGGAATTTCAGTTCAACTTTGCAACCTCCCAATCCTGTAGAACCAGGAGATGGAAAGAAAACAGGATTTGTGGTGGGATTGAGTGTTGGTGTAGTTGTTGTAGTATGTGGGTTGGGATTGGTTTGGCATCACTTGCGGAAGAAGAGGAATAGTGGGGGAGAAGAAAATGGTACTGACTCTGACCTAGTCATGGACGAAGACTTTGAGAAAGGTACTGGACCTAGGAAGTTTTCCTTTGACGAATTGGCTCTTGCAACCAGTAACTTTGCAGAGGAGGAAAAGCTTGGAGAGGGAGGGTTCGGTGGGGTCTATAGAGGCTTCTTGAGGGAACTGAACTCTTATGTTGCAGTTAAGAGAGTATCAAGGGGGTCCAAACAAGGGATGAAGGAGTATGCAGCTGAAGTGAAGATCATCAGTAGATTGAGACATCGAAACTTGGTGCGGCTCATGGGCTGGTGCCATAAAAAAGGAGAGCTCCTATTGGTTTATGAGTTCATGCCAAATGGCAACTTAAGCTCCTGTCTTTTGGAAGAAAAAACCCTGCTAACATGGGCAATGAGGTATAAAATTGCTCTTGGCTTGGCCTCTTCGTTGCTCTACCTACATGAAGAATGGGAACAATGTGTGGTACGTAGGGATATCAAATCAAGTAATGTGATGTTGGACTCAGATTTCAACGCCAAGCTTGGAGATTTTGGACTTGCCAGGCTTGTTGATCATAGCAAAGGGTCACAAACCACAGTTTTAGCTGGAACCATGGGGTACATGGATCCTGAATGTCTCCTGACAGGCAAGGCCAGCAAGGAAACTGATGTTTATAGTTTTGGGATTGTTGCCTTAGAAATCTGCTGTGGGAGAAGACCTGTGGAACCAAAAGCTAAAGAGAAGCAGGTCAGATTGGTAGAATGGGTCTGGCACCTCTATGGAGTAGGAAAGCTTGTTGATGCCGCTGATCCAAGACTATCCAACGATTTTGATGAAGAACAAATGGAACGATTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTGCGATCTTCGACCTTCAATAAGGCAAGCAATTAATGTCCTTAATTCTGAAGCTTCACTGCCTCTTCTTCCTTTAAAAATGCCTGTGCCAATGTATTGTTCTCCTCCAGTGCTACAAACAATATCGCGTGGCGCACCCATTTCTGAGAGCAGCCACACCCAGTATTCCGACTTCTCAAATAGCACAACCTCCTCATGA 2028 0.4324 MDDCNAGITPTQSHKLLSFHLCFMISIFFFLIFPSATSLSFNFTTFEPNNGQISFEGEARYSSYDGIQLTRNQQDKTMGHSWGRAIYKEQLYLWDRTSRNLTDFATNFSFVINSLNRSVHADGITFFLNGTQLPSGKFGENLGLTNNVTNTTVIRFVAVEFDTFCNKAKRDPVSDHVGIDINSTISVKTVNWSSNIEEGKLNHVSIRYTSGSQNLSVVLITEFMDDKTTSQSLSYKVDLREYLPEFVTIGFSGATGNSFQIHNIYSWNFSSTLQPPNPVEPGDGKKTGFVVGLSVGVVVVVCGLGLVWHHLRKKRNSGGEENGTDSDLVMDEDFEKGTGPRKFSFDELALATSNFAEEEKLGEGGFGGVYRGFLRELNSYVAVKRVSRGSKQGMKEYAAEVKIISRLRHRNLVRLMGWCHKKGELLLVYEFMPNGNLSSCLLEEKTLLTWAMRYKIALGLASSLLYLHEEWEQCVVRRDIKSSNVMLDSDFNAKLGDFGLARLVDHSKGSQTTVLAGTMGYMDPECLLTGKASKETDVYSFGIVALEICCGRRPVEPKAKEKQVRLVEWVWHLYGVGKLVDAADPRLSNDFDEEQMERLMIVGLWCAHPDCDLRPSIRQAINVLNSEASLPLLPLKMPVPMYCSPPVLQTISRGAPISESSHTQYSDFSNSTTSS* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0838 675 PANTHER - 55 638 - -
Vvi3g0838 675 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0838 675 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Vvi3g0838 675 FunFam L-type lectin-domain containing receptor kinase IX.1 340 431 - -
Vvi3g0838 675 Gene3D Transferase(Phosphotransferase) domain 1 432 645 - -
Vvi3g0838 675 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0838 675 SMART serkin_6 355 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0838 675 CDD lectin_legume_LecRK_Arcelin_ConA 39 273 IPR001220 GO:0030246
Vvi3g0838 675 SUPERFAMILY Protein kinase-like (PK-like) 339 662 IPR011009 -
Vvi3g0838 675 ProSitePatterns Legume lectins alpha-chain signature. 243 252 IPR000985 -
Vvi3g0838 675 FunFam L-type lectin-domain containing receptor kinase IX.1 37 280 - -
Vvi3g0838 675 CDD STKc_IRAK 361 625 - -
Vvi3g0838 675 Gene3D - 36 276 - -
Vvi3g0838 675 Pfam Legume lectin domain 38 278 IPR001220 GO:0030246
Vvi3g0838 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 273 IPR013320 -
Vvi3g0838 675 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Vvi3g0838 675 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Vvi3g0838 675 FunFam Lectin-domain containing receptor kinase A4.3 432 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0838 Vvi-Chr3 7987351 7989378 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0838 29 642 Receptor kinase-like Gene Family AT5G10530 48.243 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi3g0838 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0838 - - vvi:100265149 1302.35