Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0837 ATGCGCCGAGTGAAAGTGCCTACTTGGCATATTGGGTACATGACCTACATGCCATTGAATTTCAAACAAGTATATTACTGGGACTCAATCCAAATTCCATTTAAGACTTTCTTCTTTTTGGGCTGTGGTGCATTCTGGGAACCAGCTATGGCAACGGCCACACCTTCTCAAGAAGAGCAGAGTCTAAAAATTTTGTTCAATTCCAGAAGTTCCATGAGTAGGATGTGTTTTAGCATACTTCTTCTATTATTTTTCACCGGCGTGGCGACTTCTCAGTCCATTGTAGAGACTCTACCGGGTTTTCCTGGAAAGCTTCCCTTCAAACTTGAAACTGGATACATTAGTGTGGGAGACGTGGATGATGTGCAACTGTTCTACTACTTCATAGAGTCCGAGAGGAACCCTCGTTTGGATCCTCTTGTGCTTTGGCTCACTGGAGGCCCTGGCTGTTCTGGGTTCTCTGCTCTTGTTTATGAAATTGGTCCATTAGCTTTTGATGTAGAAGGCTATGATGGGATCTTGCCAACCCTTAAGTTGAATCCATACTCATGGACCAAGGTTGCCAGCATAATATTCATCGATGCACCTGTTGGAACCGGGTTTTCATATGCAGAAACCTCTTATGGTTACAATGTGTCAGACACATCATCAGCAGCCCAGACCTATCAGTTTCTGAGGAAGTGGTTGACATTTCACCCAAATTTTGCTGGAAATCCACTCTACATCGGTGGTGATTCCTATTCAGGCATCGTTGCCCCAATCCTCATTAAGGACATACTACATGGCCTTGAAGTCGGTCTCCAGCCAAAAATAGAACTCCAGGGATACTTGCTCGGGAATCCACTGACTGACTATTTGATTGATGACAATTCAAGAATTCCATATGCTCATCGTGTGTCCCTCATATCAGATGGACTCTACAAGGCAGCCAAAGAAACTTGCAATGGTGATTATGGGAATGTAGACATCAACAATACACTATGTGTTGAAGCTCTTCAAACTATCAAAATGTGCCTCCTACAAATAAATATTGCAATGATTTTGGAACCTCAGTGTGCTTTTGCATCCCCCCAAACAACAGAACTACAATGGGACTTGAGAGTTCAGGAAAACACTACTATGAATTACCTTCTTTCCCTATCTAGAATCCCGGAATTGCGGTGTCGGAGTTTCAGTTATGTGCTCTCCTACAAGTGGTTAAATGATATAAACGTCCAAAATGCTCTTCATGTTCAACCGGGAACTGTGAAGACTTGGAGGAGGTGCCCAAAAAGCTTCCCATCTTACACAGAAAATGTTGACAGTACTGTTGCATATCATAAGAATTTCACAAGAACAGGTCTCCGGGCTTTGATTTACAGTGGTGATCATGACCTCTCTACTCCATATATTGGTACGCTAGAATGGATAAAATCTCTTGATGTGCCTGTTTTTGATAAGTGGCGACCATGGTATGTTGATGGTCAGATTGCAGGATACACAACAAAGTTTATGAACGATCATTACCGCTTAACATATGCTACCCTAAAGGGAGCAGGCCTCACAGCTCCAGAATACAAGCACAAGGAATCTCTTGCCTTGGTTGATAGGTGGTTTGCTTATTATCCCATCTAA 1614 0.4281 MRRVKVPTWHIGYMTYMPLNFKQVYYWDSIQIPFKTFFFLGCGAFWEPAMATATPSQEEQSLKILFNSRSSMSRMCFSILLLLFFTGVATSQSIVETLPGFPGKLPFKLETGYISVGDVDDVQLFYYFIESERNPRLDPLVLWLTGGPGCSGFSALVYEIGPLAFDVEGYDGILPTLKLNPYSWTKVASIIFIDAPVGTGFSYAETSYGYNVSDTSSAAQTYQFLRKWLTFHPNFAGNPLYIGGDSYSGIVAPILIKDILHGLEVGLQPKIELQGYLLGNPLTDYLIDDNSRIPYAHRVSLISDGLYKAAKETCNGDYGNVDINNTLCVEALQTIKMCLLQINIAMILEPQCAFASPQTTELQWDLRVQENTTMNYLLSLSRIPELRCRSFSYVLSYKWLNDINVQNALHVQPGTVKTWRRCPKSFPSYTENVDSTVAYHKNFTRTGLRALIYSGDHDLSTPYIGTLEWIKSLDVPVFDKWRPWYVDGQIAGYTTKFMNDHYRLTYATLKGAGLTAPEYKHKESLALVDRWFAYYPI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0837 537 Pfam Serine carboxypeptidase 99 532 IPR001563 GO:0004185|GO:0006508
Vvi3g0837 537 FunFam Serine carboxypeptidase-like 19 88 358 - -
Vvi3g0837 537 Gene3D alpha/beta hydrolase 88 361 IPR029058 -
Vvi3g0837 537 FunFam Carboxypeptidase 387 536 - -
Vvi3g0837 537 Gene3D - 388 536 - -
Vvi3g0837 537 PRINTS Carboxypeptidase C serine protease (S10) family signature 228 253 IPR001563 GO:0004185|GO:0006508
Vvi3g0837 537 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 192 IPR001563 GO:0004185|GO:0006508
Vvi3g0837 537 PRINTS Carboxypeptidase C serine protease (S10) family signature 193 203 IPR001563 GO:0004185|GO:0006508
Vvi3g0837 537 PRINTS Carboxypeptidase C serine protease (S10) family signature 504 517 IPR001563 GO:0004185|GO:0006508
Vvi3g0837 537 SUPERFAMILY alpha/beta-Hydrolases 95 534 IPR029058 -
Vvi3g0837 537 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 93 520 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0837 Vvi-Chr3 7951352 7955807 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0837 399 537 Calmodulin-binding Proteins AT2G22960 43.885 2.59e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0837 K16296 - vvi:100253211 1004.59