Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0835 ATGGGTACAATACTAATGTACTGCCGTCTAGTTCTTGTGTTAGTCCTCTCCAGTATTGCAAGTTCGCAGTCAATCATCAAGGCACTTCCAGGATTCCCAGGAAACCTTCCCTTCAAACTTGAAACTGGGTATGTTGGAGTAGATGATATGGATGATGTGCAGTTATTCTACTACTTCGTCAAGTCTGAAAGAAATCCAAGAGATGACCCTCTATTGCTTTGGCTCACCGGAGGTCCTGGTTGTTCAGCATTTTCTGGTCTTGTATATGAAGTTGGTCCATTGTCATTCGACTATGCGAAATCCAATGAAAACTTGCCAACATTTAAATTGAACCCATACTCATGGACAAAGTTAGCCAGTATGATATTCTTGGATGCGCCCGTGGGCACTGGATTCTCCTATTCACGAACTGCAGAAGGTTACAACATGAACGACACACTATCAGCTTCACAAATCTATGCTTTTCTAAGGAAGTGGCTTATCAATCACCCCAAGTTTCAGAAAAATCCACTCTATGTCAGTGGTGACTCGTATTCAGGCATAATCATCCCCATGGTGGTTCAGGAAATATCCAATGGCAATGACGAAGGGAAAGAGCCAAAAATGAATATTCAAGGATACACGATTGGAAACCCAGTAACAGATCACTTTAGTGACTTCAATTCAAGAATTGAATACACTCATCGAGTAGGAATTCTTTCAGATGAGCTCTATGAGGAACTTAAAGAAAGCTGCAACGGGAAGTATGTATATGTAGATCCAAGCAATGTAGAATGCACAAACAATCTCAAAGTGTACACACAGTGTATCAATAAAATATATTCTGCACACATATTGGAACCTTCGTGTGCCATGTTGTCCCCAAATCCAAATGCATCAAAATTGGATCGAAGTTCCCTCCAAGAAATCAATTCCATAGGTTTACTCCTTTCTCAACCTCAAAAACCTGAACCATGGTGCCGGAGTTATAACTACGTGTTTTCCTACCTCTGGGCTAATGATAAAACCGTCCAAAAGGCTCTTCACGTTCGAGAGGCAATAAAGGACTGGGTGAGATGCAATGAAAGCTTGTCTTACACTTCTAATGTCTTCAGTTCTGTTGATTATCATCGAAATCTCACTAAGAAAGCTTATCGAGCTCTGATTTACAGTGGTGATCATGATATGCTTATTCCATATGTTGGTACACAAGCATGGATAGCATCTCTCAACTTAAATATTTCTGAAGACTGGCAACCATGGTTTGTGGATGGTCAAGTTGCAGGGTTTAGGGTTGAGTATTTACACAACAAATATCTGATGACATTTGCTACTGTAAAGGGAGCGGGTCACACAGCTCCAGAATACAGGCCTAAGGAAGGCTTTGCCATGGTTTATAGGTGGCTTGCTCACTACTTTCTCTAG 1404 0.411 MGTILMYCRLVLVLVLSSIASSQSIIKALPGFPGNLPFKLETGYVGVDDMDDVQLFYYFVKSERNPRDDPLLLWLTGGPGCSAFSGLVYEVGPLSFDYAKSNENLPTFKLNPYSWTKLASMIFLDAPVGTGFSYSRTAEGYNMNDTLSASQIYAFLRKWLINHPKFQKNPLYVSGDSYSGIIIPMVVQEISNGNDEGKEPKMNIQGYTIGNPVTDHFSDFNSRIEYTHRVGILSDELYEELKESCNGKYVYVDPSNVECTNNLKVYTQCINKIYSAHILEPSCAMLSPNPNASKLDRSSLQEINSIGLLLSQPQKPEPWCRSYNYVFSYLWANDKTVQKALHVREAIKDWVRCNESLSYTSNVFSSVDYHRNLTKKAYRALIYSGDHDMLIPYVGTQAWIASLNLNISEDWQPWFVDGQVAGFRVEYLHNKYLMTFATVKGAGHTAPEYRPKEGFAMVYRWLAHYFL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0835 467 SUPERFAMILY alpha/beta-Hydrolases 26 465 IPR029058 -
Vvi3g0835 467 Gene3D - 320 466 - -
Vvi3g0835 467 FunFam Carboxypeptidase 319 466 - -
Vvi3g0835 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 451 IPR001563 GO:0004185|GO:0006508
Vvi3g0835 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Vvi3g0835 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 434 447 IPR001563 GO:0004185|GO:0006508
Vvi3g0835 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vvi3g0835 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vvi3g0835 467 Gene3D alpha/beta hydrolase 20 290 IPR029058 -
Vvi3g0835 467 FunFam Serine carboxypeptidase-like 11 20 467 - -
Vvi3g0835 467 Pfam Serine carboxypeptidase 30 463 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0835 Vvi-Chr3 7935404 7938767 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0835 302 463 Calmodulin-binding Proteins AT2G22960 43.902 8.21e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0835 K16296 - vvi:100258422 946.421