Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0833 ATGTATAGGAGCTTGCTTCTTGTGTTAGCTTTCTCAAGCATTGCTGTATCAGAGTCAATCATCAAGACACTGCCAGGGTTTGAAGGAGATCTTCCCTTCAAACTTGAAACAGGGTATGTGGGGGTTGGCAAATCCGATGACATCCAGCTATTCTATTACTTCATCGAGTCTGAGAGGAATCCAAGCTTGGATCCTCTAATGCTTTGGCTCACTGGAGGCCCTGGGTGTTCTGCCTTTAGTGGTTTAGTCTATGAAATTGGTCCATTGATATTCGACTATGCAAATCGCAGTGGAGACATACCAGCATTATTGTCGAATCCATACTCCTGGACAAAGGTTGCCAGTATAATATTTTTGGATTCACCAGTTGGCTCTGGGTTCTCTTATGCCCAAAGTTCTGAAGGTTACCGCACTAGTGATTCACTGGCAGCAGCACATGGTTATGATTTTCTAAAGAAGTGGCTCATTGACCATCCTGAGTTTCTCAGAAATCGGTTATACATTGCTGGTGATTCGTATTCAGGCCTTTTTGTTCCAATCATTGCTCAGAAAATATCAGATGGCAACGAAGCTGGACAAGAGCCACACATGAATCTCAATGGATATTTGCTAGGGAATGCCCTAGTAGATGAAAACATCGACTTCAATTCGAGAGTTCCATTTGCTCACAGAATGACATTTTTATCAGATAAACTCTATAAGAAAACTGAGGCAAGCTGCAATGGTAAGTATCTGAAAGCAGATCCAAGCAATGGACAATGCACAGAAAATCTTAAAGTTGTTAATAAGTGCATGGAGAAAATAAATCTTCCACATGTATTGGAACCCAAGTGTGGTAGGCCACTCTCCTGGAAACCAAATGCCTTAAAATGGGAATCAATCCCTTTGGAGGAGAATTTCTCGGATTTCCTCCTTTCACCAATCCGCCAACTTCCTGAACCAACATGTCGGCTTTACAAATTTTTGTTCTCCTACATTTGGGCTAATGATAGAAGGGTTCAAAAAGCTCTTGGCATTAGAGAGGGGACAATACCAGAGTGGGTTAGATGCAATAATAGCTTAGCTTACACACATGATGTCTTCAGTACAGTGGCTTATATTCAGAAGCTCCATGAGAAAGGCTATGGAGGTCTGATTTACAGTGGTGATCATGACATGCTTGTTCCACATATGGGCACACAGGAATGGATAAATTCTCTTAACTTGTCGATTTCCAAAGACTGGGAGCCATGGTTTGTTGATGGCCAAGTTGCAGGATTCAGTATCGAGTATTCAAACAGCAAACGTGGTATGACATTTGCAACTGTAAAGGGAGGGGGTCACACAGCTCCAGAATACAAACCTAAGGAATGTCTTGCTATGATCTATAGATGGTTGGCTTATTATCCGCTCTAG 1395 0.4208 MYRSLLLVLAFSSIAVSESIIKTLPGFEGDLPFKLETGYVGVGKSDDIQLFYYFIESERNPSLDPLMLWLTGGPGCSAFSGLVYEIGPLIFDYANRSGDIPALLSNPYSWTKVASIIFLDSPVGSGFSYAQSSEGYRTSDSLAAAHGYDFLKKWLIDHPEFLRNRLYIAGDSYSGLFVPIIAQKISDGNEAGQEPHMNLNGYLLGNALVDENIDFNSRVPFAHRMTFLSDKLYKKTEASCNGKYLKADPSNGQCTENLKVVNKCMEKINLPHVLEPKCGRPLSWKPNALKWESIPLEENFSDFLLSPIRQLPEPTCRLYKFLFSYIWANDRRVQKALGIREGTIPEWVRCNNSLAYTHDVFSTVAYIQKLHEKGYGGLIYSGDHDMLVPHMGTQEWINSLNLSISKDWEPWFVDGQVAGFSIEYSNSKRGMTFATVKGGGHTAPEYKPKECLAMIYRWLAYYPL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0833 464 Gene3D - 319 463 - -
Vvi3g0833 464 Gene3D alpha/beta hydrolase 15 285 IPR029058 -
Vvi3g0833 464 SUPERFAMILY alpha/beta-Hydrolases 21 462 IPR029058 -
Vvi3g0833 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 20 448 IPR001563 GO:0004185|GO:0006508
Vvi3g0833 464 Pfam Serine carboxypeptidase 25 459 IPR001563 GO:0004185|GO:0006508
Vvi3g0833 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 129 IPR001563 GO:0004185|GO:0006508
Vvi3g0833 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 118 IPR001563 GO:0004185|GO:0006508
Vvi3g0833 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 179 IPR001563 GO:0004185|GO:0006508
Vvi3g0833 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Vvi3g0833 464 FunFam Carboxypeptidase 315 463 - -
Vvi3g0833 464 FunFam Serine carboxypeptidase-like 19 14 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0833 Vvi-Chr3 7904216 7907567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0833 327 464 Calmodulin-binding Proteins AT2G22960 50.725 1.91e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0833 K16296 - vvi:100256695 964.911